Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLUC08_RS11140 | Genome accession | NZ_CP015903 |
| Coordinates | 2271695..2272195 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain UC08 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2266695..2277195
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC08_RS11115 (LLUC08_2150) | gnd | 2267757..2268662 (-) | 906 | WP_038603774.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLUC08_RS11120 (LLUC08_2151) | - | 2269027..2269875 (+) | 849 | WP_012898662.1 | MurR/RpiR family transcriptional regulator | - |
| LLUC08_RS11125 (LLUC08_2152) | - | 2269913..2270221 (+) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| LLUC08_RS11130 (LLUC08_2153) | - | 2270303..2271076 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| LLUC08_RS11135 (LLUC08_2154) | rpsR | 2271276..2271521 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLUC08_RS11140 (LLUC08_2155) | ssb | 2271695..2272195 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUC08_RS11145 (LLUC08_2156) | rpsF | 2272225..2272518 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| LLUC08_RS11150 (LLUC08_2157) | - | 2272710..2273564 (-) | 855 | WP_064973724.1 | undecaprenyl-diphosphate phosphatase | - |
| LLUC08_RS11155 (LLUC08_2158) | - | 2274086..2275552 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=183153 LLUC08_RS11140 WP_003131953.1 2271695..2272195(-) (ssb) [Lactococcus lactis subsp. lactis strain UC08]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=183153 LLUC08_RS11140 WP_003131953.1 2271695..2272195(-) (ssb) [Lactococcus lactis subsp. lactis strain UC08]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |