Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BV121_RS01695 Genome accession   NZ_CP020008
Coordinates   349141..350148 (-) Length   335 a.a.
NCBI ID   WP_105182545.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 5P28H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 344141..355148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV121_RS01665 (BV121_338) ruvX 344282..344701 (+) 420 WP_005648994.1 Holliday junction resolvase RuvX -
  BV121_RS01670 rdgC 344751..345658 (-) 908 Protein_300 recombination-associated protein RdgC -
  BV121_RS01675 (BV121_341) proC 345724..346539 (+) 816 WP_011271979.1 pyrroline-5-carboxylate reductase -
  BV121_RS01680 (BV121_342) - 346539..347705 (+) 1167 WP_011271980.1 3-phenylpropionate MFS transporter -
  BV121_RS01685 (BV121_343) xerD 347736..348629 (+) 894 WP_011271981.1 site-specific tyrosine recombinase XerD -
  BV121_RS01690 (BV121_344) - 348802..349089 (+) 288 WP_011271982.1 DUF5339 domain-containing protein -
  BV121_RS01695 (BV121_345) ruvB 349141..350148 (-) 1008 WP_105182545.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BV121_RS01700 (BV121_346) ruvA 350156..350770 (-) 615 WP_038440774.1 Holliday junction branch migration protein RuvA -
  BV121_RS01705 (BV121_347) ruvC 350833..351405 (-) 573 WP_011271984.1 crossover junction endodeoxyribonuclease RuvC -
  BV121_RS01710 (BV121_348) - 351452..352192 (-) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BV121_RS01715 (BV121_349) nudB 352204..352677 (-) 474 WP_011271985.1 dihydroneopterin triphosphate diphosphatase -
  BV121_RS01720 (BV121_350) aspS 352699..354465 (-) 1767 WP_042594297.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37032.40 Da        Isoelectric Point: 4.8466

>NTDB_id=183070 BV121_RS01695 WP_105182545.1 349141..350148(-) (ruvB) [Haemophilus influenzae strain 5P28H1]
MIEADRIISGQAKLDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLGNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=183070 BV121_RS01695 WP_105182545.1 349141..350148(-) (ruvB) [Haemophilus influenzae strain 5P28H1]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGCTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCTGGCTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGCGATTTGGCTGCAATGCTTACTAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACCTCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCGCTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGGCTAGGTAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGTGGCCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.08

97.612

0.606
  ruvB Streptococcus pneumoniae TIGR4

58.282

97.313

0.567
  ruvB Streptococcus pneumoniae R6

58.282

97.313

0.567
  ruvB Streptococcus pneumoniae D39

58.282

97.313

0.567
  ruvB Helicobacter pylori 26695

54.633

93.433

0.51
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507