Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | LLJM3_RS11780 | Genome accession | NZ_CP015901 |
| Coordinates | 2262186..2262374 (-) | Length | 62 a.a. |
| NCBI ID | WP_014573336.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain JM3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2257186..2267374
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLJM3_RS11745 (LLJM3_2403) | - | 2258112..2258921 (-) | 810 | WP_011677177.1 | metal ABC transporter permease | - |
| LLJM3_RS11750 (LLJM3_2404) | - | 2258914..2259651 (-) | 738 | WP_011677178.1 | metal ABC transporter ATP-binding protein | - |
| LLJM3_RS11755 (LLJM3_2405) | - | 2259830..2260672 (-) | 843 | WP_011677179.1 | metal ABC transporter solute-binding protein, Zn/Mn family | - |
| LLJM3_RS11760 (LLJM3_2406) | - | 2260669..2261106 (-) | 438 | WP_011677180.1 | zinc-dependent MarR family transcriptional regulator | - |
| LLJM3_RS11765 (LLJM3_03405) | comGG | 2261186..2261485 (-) | 300 | WP_011677181.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| LLJM3_RS11770 (LLJM3_2408) | comGF | 2261509..2261934 (-) | 426 | WP_011677182.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LLJM3_RS11775 (LLJM3_2409) | comGE | 2261918..2262214 (-) | 297 | WP_011677183.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| LLJM3_RS11780 (LLJM3_2410) | comGD | 2262186..2262374 (-) | 189 | WP_014573336.1 | hypothetical protein | Machinery gene |
| LLJM3_RS11785 (LLJM3_2411) | comGC | 2262576..2262926 (-) | 351 | WP_050574401.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LLJM3_RS11790 (LLJM3_2412) | comGB | 2262971..2263997 (-) | 1027 | Protein_2295 | competence type IV pilus assembly protein ComGB | - |
| LLJM3_RS11795 (LLJM3_03410) | - | 2263897..2264718 (-) | 822 | Protein_2296 | ATPase, T2SS/T4P/T4SS family | - |
| LLJM3_RS11800 (LLJM3_2414) | - | 2264821..2265711 (+) | 891 | WP_011677100.1 | IS982 family transposase | - |
| LLJM3_RS11805 (LLJM3_03415) | comGA | 2265693..2265884 (-) | 192 | WP_041167484.1 | hypothetical protein | Machinery gene |
Sequence
Protein
Download Length: 62 a.a. Molecular weight: 7336.65 Da Isoelectric Point: 8.3463
>NTDB_id=183045 LLJM3_RS11780 WP_014573336.1 2262186..2262374(-) (comGD) [Lactococcus cremoris strain JM3]
MIYENKEIDIPKEVEMAEFLIIFDEKGGNSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN
MIYENKEIDIPKEVEMAEFLIIFDEKGGNSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN
Nucleotide
Download Length: 189 bp
>NTDB_id=183045 LLJM3_RS11780 WP_014573336.1 2262186..2262374(-) (comGD) [Lactococcus cremoris strain JM3]
TTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTATATTTGATGAGAAAGG
GGGGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGGGGA
GTGGAAAATATAAAAAGAAAATCAATTAA
TTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTATATTTGATGAGAAAGG
GGGGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGGGGA
GTGGAAAATATAAAAAGAAAATCAATTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Lactococcus lactis subsp. cremoris KW2 |
93.548 |
100 |
0.935 |
| comYD | Streptococcus mutans UA140 |
43.396 |
85.484 |
0.371 |
| comYD | Streptococcus mutans UA159 |
43.396 |
85.484 |
0.371 |