Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLJM3_RS09190 Genome accession   NZ_CP015901
Coordinates   1800114..1801097 (-) Length   327 a.a.
NCBI ID   WP_011676725.1    Uniprot ID   -
Organism   Lactococcus cremoris strain JM3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1795114..1806097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJM3_RS09175 (LLJM3_1804) - 1796466..1797392 (-) 927 WP_011676722.1 peptidyl-prolyl cis-trans isomerase -
  LLJM3_RS09180 (LLJM3_1805) - 1797548..1798231 (-) 684 WP_011676723.1 O-methyltransferase -
  LLJM3_RS09185 (LLJM3_03205) pepF 1798234..1800039 (-) 1806 WP_011676724.1 oligoendopeptidase F Regulator
  LLJM3_RS09190 (LLJM3_1808) coiA 1800114..1801097 (-) 984 WP_011676725.1 competence protein CoiA Machinery gene
  LLJM3_RS09195 (LLJM3_1809) - 1801172..1802257 (-) 1086 WP_011676726.1 YdcF family protein -
  LLJM3_RS09200 (LLJM3_1810) - 1802411..1802998 (-) 588 WP_250638140.1 alpha/beta hydrolase -
  LLJM3_RS09205 (LLJM3_1811) - 1803037..1803234 (-) 198 WP_250638141.1 alpha/beta hydrolase -
  LLJM3_RS09210 (LLJM3_1812) - 1803467..1804888 (-) 1422 WP_011676727.1 NCS2 family permease -
  LLJM3_RS09215 (LLJM3_1813) - 1805194..1806030 (+) 837 WP_011676728.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39091.84 Da        Isoelectric Point: 9.8284

>NTDB_id=183028 LLJM3_RS09190 WP_011676725.1 1800114..1801097(-) (coiA) [Lactococcus cremoris strain JM3]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQHLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLRLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=183028 LLJM3_RS09190 WP_011676725.1 1800114..1801097(-) (coiA) [Lactococcus cremoris strain JM3]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTAAGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAAAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

96.942

100

0.969
  coiA Streptococcus mitis NCTC 12261

44.136

99.083

0.437
  coiA Streptococcus pneumoniae TIGR4

42.901

99.083

0.425
  coiA Streptococcus pneumoniae Rx1

42.901

99.083

0.425
  coiA Streptococcus pneumoniae D39

42.901

99.083

0.425
  coiA Streptococcus pneumoniae R6

42.901

99.083

0.425

Multiple sequence alignment