Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLJM1_RS11860 | Genome accession | NZ_CP015899 |
| Coordinates | 2289359..2289859 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris strain JM1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2284359..2294859
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLJM1_RS11835 (LLJM1_2285) | gnd | 2285484..2286389 (-) | 906 | WP_011677237.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLJM1_RS11840 (LLJM1_2286) | - | 2286758..2287606 (+) | 849 | WP_011677238.1 | MurR/RpiR family transcriptional regulator | - |
| LLJM1_RS11845 (LLJM1_2287) | - | 2287645..2287953 (+) | 309 | WP_011836103.1 | DUF960 domain-containing protein | - |
| LLJM1_RS11850 (LLJM1_2288) | - | 2288026..2288811 (-) | 786 | WP_021164832.1 | metallophosphoesterase | - |
| LLJM1_RS11855 (LLJM1_2289) | rpsR | 2288942..2289187 (-) | 246 | WP_032951397.1 | 30S ribosomal protein S18 | - |
| LLJM1_RS11860 (LLJM1_2290) | ssb | 2289359..2289859 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| LLJM1_RS11865 (LLJM1_2291) | rpsF | 2289889..2290182 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| LLJM1_RS11870 (LLJM1_2292) | - | 2290376..2291230 (-) | 855 | WP_021164831.1 | undecaprenyl-diphosphate phosphatase | - |
| LLJM1_RS11875 (LLJM1_2293) | - | 2291752..2293200 (+) | 1449 | WP_032951396.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=182958 LLJM1_RS11860 WP_011677241.1 2289359..2289859(-) (ssb) [Lactococcus cremoris strain JM1]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=182958 LLJM1_RS11860 WP_011677241.1 2289359..2289859(-) (ssb) [Lactococcus cremoris strain JM1]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |