Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BV083_RS02965 Genome accession   NZ_CP020006
Coordinates   598893..599396 (+) Length   167 a.a.
NCBI ID   WP_005662536.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 48P106H1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 593893..604396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV083_RS02925 (BV083_598) atpF 594105..594575 (-) 471 WP_005649414.1 F0F1 ATP synthase subunit B -
  BV083_RS02930 (BV083_599) atpE 594625..594879 (-) 255 WP_005629249.1 F0F1 ATP synthase subunit C -
  BV083_RS02935 (BV083_600) atpB 594935..595723 (-) 789 WP_005686967.1 F0F1 ATP synthase subunit A -
  BV083_RS02940 (BV083_601) - 595751..596125 (-) 375 WP_005686968.1 ATP synthase subunit I -
  BV083_RS02945 (BV083_602) rsmG 596244..596855 (-) 612 WP_005686970.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BV083_RS02950 (BV083_603) - 596995..597372 (-) 378 WP_005686972.1 PRD domain-containing protein -
  BV083_RS02955 (BV083_605) - 597488..598090 (+) 603 WP_005686974.1 beta-phosphoglucomutase family hydrolase -
  BV083_RS02960 (BV083_606) - 598090..598563 (+) 474 WP_005656551.1 YqaA family protein -
  BV083_RS02965 (BV083_607) luxS 598893..599396 (+) 504 WP_005662536.1 S-ribosylhomocysteine lyase Regulator
  BV083_RS09235 - 599703..599897 (+) 195 WP_228840878.1 helix-turn-helix domain-containing protein -
  BV083_RS09410 - 600156..600268 (+) 113 Protein_555 IS3 family transposase -
  BV083_RS02975 (BV083_608) aphA 600315..601022 (-) 708 WP_005649426.1 acid phosphatase AphA -
  BV083_RS02980 (BV083_609) hslV 601242..601769 (+) 528 WP_005662532.1 ATP-dependent protease subunit HslV -
  BV083_RS02985 (BV083_610) hslU 601780..603114 (+) 1335 WP_042593308.1 HslU--HslV peptidase ATPase subunit -
  BV083_RS02990 (BV083_611) - 603184..604236 (-) 1053 WP_005686979.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.22 Da        Isoelectric Point: 4.9925

>NTDB_id=182958 BV083_RS02965 WP_005662536.1 598893..599396(+) (luxS) [Haemophilus influenzae strain 48P106H1]
MPLLDSFKVDHTKMNAPAVRIAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=182958 BV083_RS02965 WP_005662536.1 598893..599396(+) (luxS) [Haemophilus influenzae strain 48P106H1]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCGCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCACTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTATCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTTCTATTCCCGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737

Multiple sequence alignment