Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLJM1_RS08890 Genome accession   NZ_CP015899
Coordinates   1695083..1696501 (-) Length   472 a.a.
NCBI ID   WP_228764444.1    Uniprot ID   A0AAF0SV34
Organism   Lactococcus cremoris strain JM1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1693599..1694491 1695083..1696501 flank 592


Gene organization within MGE regions


Location: 1693599..1696501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJM1_RS08880 (LLJM1_03610) - 1693610..1694500 (-) 891 WP_015082326.1 IS982-like element IS982B family transposase -
  LLJM1_RS08885 (LLJM1_03615) comEC 1694577..1695086 (-) 510 WP_021165649.1 MBL fold metallo-hydrolase Machinery gene
  LLJM1_RS08890 (LLJM1_1719) comEC 1695083..1696501 (-) 1419 WP_228764444.1 ComEC/Rec2 family competence protein Machinery gene

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 55013.76 Da        Isoelectric Point: 9.7565

>NTDB_id=182943 LLJM1_RS08890 WP_228764444.1 1695083..1696501(-) (comEC) [Lactococcus cremoris strain JM1]
MRFLLIKFPLIFLTYLVVLLYFCIFTYNLPLLILFICSILLALFRKYYLMIPILIVFAVFFLLINSLSIRDNENQPKNLS
KIELIPDTIQVNGDLLSFQGRMNGQKYQVYDTLKSLKEKGFYQNLSQNCQLSFTGNLEIPETQRNFNGFDDQKYLTSQNI
YRQITIQQITNVEIKKNFDLHTLRRKAIVWTQNHFPKPMSDYMTGLLFGFLSKDFNQMSDIYSSLGIIHLFALSGMQVNF
FIDWFRKILLRMGLTRERVNLVQIPFSIFYAFMTGLSVSVLRALFQKNIRLTSLDNIAVTTLVLMLISPKFLLTTGGQLT
LFYAFVISMLNHPFSNLNGLKKVLTESSVLSLCVLPLLIFDFHIFQPLSILLTIIFGFLFDFMLLPLLLCCFLISFLGFS
LNLNYIFQILEWLVYKVDLPLHYPFVLGKPSSLELIILFVLIGLFVDSFSHKKRRFFLIGFIFLFFSSLKIQ

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=182943 LLJM1_RS08890 WP_228764444.1 1695083..1696501(-) (comEC) [Lactococcus cremoris strain JM1]
ATGAGATTTCTATTGATTAAATTTCCCCTGATTTTTCTAACTTATCTTGTTGTGCTACTTTATTTTTGTATCTTTACTTA
CAATTTACCCTTGCTTATTTTATTTATTTGCTCAATTTTACTAGCTTTATTCAGAAAATATTATCTAATGATTCCGATAT
TAATTGTTTTTGCTGTATTTTTTCTGTTAATCAATAGTCTTAGTATTAGGGATAATGAAAATCAACCAAAAAATCTCTCA
AAAATTGAATTAATTCCAGATACAATCCAAGTCAATGGTGATTTATTGAGTTTTCAGGGGAGAATGAATGGACAAAAATA
TCAAGTCTATGACACATTGAAAAGTCTAAAAGAGAAAGGGTTTTATCAGAACTTAAGTCAAAATTGTCAGTTAAGTTTCA
CAGGAAACCTTGAAATACCAGAAACTCAGCGAAATTTTAATGGTTTTGATGACCAAAAATATTTAACTAGTCAAAATATC
TATCGACAGATTACCATCCAACAAATTACAAATGTGGAAATAAAAAAGAATTTTGACCTTCATACTTTAAGGCGAAAGGC
AATTGTTTGGACACAAAATCATTTTCCAAAACCGATGAGTGACTATATGACAGGTTTGCTTTTTGGCTTTTTAAGTAAGG
ATTTTAATCAGATGAGCGATATTTACAGCTCTTTAGGAATTATTCATCTTTTTGCTCTATCAGGAATGCAAGTAAATTTT
TTTATTGATTGGTTTCGTAAAATACTTCTTCGCATGGGACTGACGAGAGAGAGAGTGAATCTTGTTCAAATTCCATTTTC
TATTTTTTATGCTTTTATGACGGGATTATCGGTTTCAGTTTTAAGAGCCCTTTTTCAAAAAAATATTCGTCTGACTTCTT
TGGATAATATCGCAGTTACGACATTAGTTTTGATGCTCATAAGTCCAAAATTTTTACTGACGACTGGTGGTCAGCTTACC
TTGTTTTATGCTTTTGTCATTTCGATGCTTAATCATCCTTTTTCTAATTTAAATGGATTGAAAAAAGTGCTGACAGAATC
ATCAGTCCTTTCACTTTGTGTTCTTCCGTTACTCATCTTTGATTTCCATATTTTTCAGCCTCTTTCAATATTATTAACAA
TTATATTTGGTTTTCTTTTTGATTTTATGTTGCTCCCGCTGCTTTTATGCTGTTTTCTTATATCATTTTTGGGATTTTCG
CTCAATTTAAATTATATTTTTCAAATTCTAGAATGGCTAGTTTATAAAGTTGATTTACCCTTACATTACCCCTTTGTTTT
GGGGAAACCTAGTTCACTCGAATTAATTATTCTATTTGTGTTAATTGGTTTATTCGTAGATTCATTTTCTCATAAAAAAA
GGAGATTTTTTTTAATTGGATTTATATTTTTATTTTTTTCATCACTAAAAATCCAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(27-171)

Competence protein (Competence)

(206-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

97.425

98.729

0.962
  comEC/celB Streptococcus mitis SK321

44.368

92.161

0.409
  comEC/celB Streptococcus mitis NCTC 12261

43.678

92.161

0.403
  comEC/celB Streptococcus pneumoniae TIGR4

43.678

92.161

0.403
  comEC/celB Streptococcus pneumoniae Rx1

42.989

92.161

0.396
  comEC/celB Streptococcus pneumoniae D39

42.989

92.161

0.396
  comEC/celB Streptococcus pneumoniae R6

42.989

92.161

0.396

Multiple sequence alignment