Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LL158_RS08385 Genome accession   NZ_CP015894
Coordinates   1671729..1672712 (-) Length   327 a.a.
NCBI ID   WP_015082718.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666729..1677712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL158_RS08370 (LL158_1619) - 1668081..1669007 (-) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -
  LL158_RS08375 (LL158_1620) - 1669163..1669846 (-) 684 WP_011676723.1 O-methyltransferase -
  LL158_RS08380 (LL158_1621) pepF 1669849..1671654 (-) 1806 WP_081172469.1 oligoendopeptidase F Regulator
  LL158_RS08385 (LL158_1622) coiA 1671729..1672712 (-) 984 WP_015082718.1 competence protein CoiA Machinery gene
  LL158_RS08390 (LL158_1623) - 1672787..1673873 (-) 1087 Protein_1630 YdcF family protein -
  LL158_RS08395 (LL158_1624) - 1674027..1674614 (-) 588 WP_014572239.1 alpha/beta hydrolase -
  LL158_RS08400 (LL158_03050) - 1674653..1674850 (-) 198 WP_250638141.1 alpha/beta hydrolase -
  LL158_RS08405 (LL158_1625) - 1675083..1676504 (-) 1422 WP_015082720.1 NCS2 family permease -
  LL158_RS08410 (LL158_1626) - 1676810..1677646 (+) 837 WP_015082721.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39120.92 Da        Isoelectric Point: 9.8805

>NTDB_id=182834 LL158_RS08385 WP_015082718.1 1671729..1672712(-) (coiA) [Lactococcus cremoris strain 158]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQHLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIKIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=182834 LL158_RS08385 WP_015082718.1 1671729..1672712(-) (coiA) [Lactococcus cremoris strain 158]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTAA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

96.942

100

0.969
  coiA Streptococcus mitis NCTC 12261

44.136

99.083

0.437
  coiA Streptococcus pneumoniae TIGR4

42.901

99.083

0.425
  coiA Streptococcus pneumoniae Rx1

42.901

99.083

0.425
  coiA Streptococcus pneumoniae D39

42.901

99.083

0.425
  coiA Streptococcus pneumoniae R6

42.901

99.083

0.425

Multiple sequence alignment