Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   AT729_RS00125 Genome accession   NZ_CP015886
Coordinates   16847..17185 (-) Length   112 a.a.
NCBI ID   WP_079889310.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 38277     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11847..22185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS00095 (AT729_00016) gnd 11988..13436 (-) 1449 WP_079889307.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  AT729_RS00110 (AT729_00017) lpxC 14570..15493 (-) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  AT729_RS00120 (AT729_00018) - 16336..16713 (-) 378 Protein_16 pilin -
  AT729_RS00125 (AT729_00019) pilE 16847..17185 (-) 339 WP_079889310.1 pilin Machinery gene
  AT729_RS00130 (AT729_00020) - 17384..17737 (-) 354 Protein_18 pilin -
  AT729_RS00135 (AT729_00021) pilE 17821..18171 (-) 351 WP_079889311.1 pilin Machinery gene
  AT729_RS00145 (AT729_00022) - 18462..18845 (-) 384 Protein_20 pilin -
  AT729_RS00150 (AT729_00023) - 18955..19362 (-) 408 Protein_21 pilin -
  AT729_RS00155 (AT729_00024) - 19482..19832 (-) 351 Protein_22 pilin -
  AT729_RS00160 (AT729_00025) - 20176..20562 (-) 387 Protein_23 pilin -
  AT729_RS00165 (AT729_00026) - 20745..21173 (-) 429 Protein_24 pilin -
  AT729_RS14035 - 21696..22001 (-) 306 Protein_25 pilin -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12200.76 Da        Isoelectric Point: 8.9348

>NTDB_id=182765 AT729_RS00125 WP_079889310.1 16847..17185(-) (pilE) [Neisseria meningitidis strain 38277]
MTGFNDAAGMASSSDIKGKYVEKVEVAKGVITATMLSSGVNNEIKGKKLSLWAKRQDGSVKWFCGQPVERNTAADDDVAD
DSGNDKIDTKLKKPFYPISFRTDRPGFPPARE

Nucleotide


Download         Length: 339 bp        

>NTDB_id=182765 AT729_RS00125 WP_079889310.1 16847..17185(-) (pilE) [Neisseria meningitidis strain 38277]
ATGACGGGATTTAATGATGCCGCCGGCATGGCATCCTCCTCCGACATCAAAGGCAAATATGTTGAGAAAGTTGAAGTCGC
AAAAGGCGTCATTACCGCCACAATGCTTTCAAGCGGCGTAAACAACGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCA
AGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTGAGCGCAACACCGCCGCCGACGACGACGTCGCCGAC
GACAGCGGCAACGACAAAATCGACACCAAACTAAAGAAACCGTTTTACCCGATAAGTTTCCGTACCGACAGACCTGGATT
CCCGCCTGCGCGGGAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(6-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.093

76.786

0.554
  pilE Neisseria gonorrhoeae MS11

70.115

77.679

0.545

Multiple sequence alignment