Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | A8140_RS13045 | Genome accession | NZ_CP015863 |
| Coordinates | 2738096..2738965 (+) | Length | 289 a.a. |
| NCBI ID | WP_005534046.1 | Uniprot ID | - |
| Organism | Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2733096..2743965
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8140_RS13025 (A8140_12385) | nadC | 2733485..2734372 (+) | 888 | WP_005536694.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| A8140_RS13030 (A8140_12390) | pilA | 2734637..2735068 (+) | 432 | WP_005534039.1 | pilin | Machinery gene |
| A8140_RS13035 (A8140_12395) | pilB | 2735080..2736765 (+) | 1686 | WP_005534041.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| A8140_RS13040 (A8140_12400) | pilC | 2736800..2738023 (+) | 1224 | WP_005534044.1 | type II secretion system F family protein | Machinery gene |
| A8140_RS13045 (A8140_12405) | pilD | 2738096..2738965 (+) | 870 | WP_005534046.1 | prepilin peptidase | Machinery gene |
| A8140_RS13050 (A8140_12410) | coaE | 2738966..2739580 (+) | 615 | WP_005534049.1 | dephospho-CoA kinase | - |
| A8140_RS13055 (A8140_12415) | zapD | 2739608..2740348 (+) | 741 | WP_005534051.1 | cell division protein ZapD | - |
| A8140_RS13060 (A8140_12420) | yacG | 2740411..2740605 (+) | 195 | WP_005534053.1 | DNA gyrase inhibitor YacG | - |
| A8140_RS13065 (A8140_12425) | rplS | 2740942..2741295 (-) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| A8140_RS13070 (A8140_12430) | trmD | 2741337..2742080 (-) | 744 | WP_005534054.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| A8140_RS13075 (A8140_12435) | rimM | 2742108..2742656 (-) | 549 | WP_005534055.1 | ribosome maturation factor RimM | - |
| A8140_RS13080 (A8140_12440) | rpsP | 2742684..2742932 (-) | 249 | WP_004410028.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32598.87 Da Isoelectric Point: 7.5422
>NTDB_id=182596 A8140_RS13045 WP_005534046.1 2738096..2738965(+) (pilD) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGMQIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALAFAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLITGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGMQIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALAFAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLITGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV
Nucleotide
Download Length: 870 bp
>NTDB_id=182596 A8140_RS13045 WP_005534046.1 2738096..2738965(+) (pilD) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGCATGCAAATTCGCATTCGT
GACAATATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTTTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTATAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTCGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTTGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGCATGCAAATTCGCATTCGT
GACAATATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTTTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTATAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTCGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTTGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
97.924 |
100 |
0.979 |
| pilD | Vibrio cholerae strain A1552 |
74.306 |
99.654 |
0.74 |
| pilD | Acinetobacter baumannii D1279779 |
52.768 |
93.772 |
0.495 |
| pilD | Acinetobacter nosocomialis M2 |
52.399 |
93.772 |
0.491 |
| pilD | Neisseria gonorrhoeae MS11 |
44.928 |
95.502 |
0.429 |