Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | A8140_RS13030 | Genome accession | NZ_CP015863 |
| Coordinates | 2734637..2735068 (+) | Length | 143 a.a. |
| NCBI ID | WP_005534039.1 | Uniprot ID | - |
| Organism | Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2729637..2740068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8140_RS13015 (A8140_12375) | pdhR | 2731669..2732436 (-) | 768 | WP_005428674.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| A8140_RS13020 (A8140_12380) | ampD | 2732841..2733392 (-) | 552 | WP_005536692.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| A8140_RS13025 (A8140_12385) | nadC | 2733485..2734372 (+) | 888 | WP_005536694.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| A8140_RS13030 (A8140_12390) | pilA | 2734637..2735068 (+) | 432 | WP_005534039.1 | pilin | Machinery gene |
| A8140_RS13035 (A8140_12395) | pilB | 2735080..2736765 (+) | 1686 | WP_005534041.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| A8140_RS13040 (A8140_12400) | pilC | 2736800..2738023 (+) | 1224 | WP_005534044.1 | type II secretion system F family protein | Machinery gene |
| A8140_RS13045 (A8140_12405) | pilD | 2738096..2738965 (+) | 870 | WP_005534046.1 | prepilin peptidase | Machinery gene |
| A8140_RS13050 (A8140_12410) | coaE | 2738966..2739580 (+) | 615 | WP_005534049.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 14588.52 Da Isoelectric Point: 4.9813
>NTDB_id=182593 A8140_RS13030 WP_005534039.1 2734637..2735068(+) (pilA) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MNTNKQKKQQGFTLIELMIVVAIIGVLAAVAIPAYQDYVKKSEAASALATLKSLITPAELYYQENGTSTAAGLSDLGSVA
SANDLGTLTSVIGSGSGGVPTLKFAFGSNSSMASTDTLTFSRSATEGWSCARAGTVPAIDGCQ
MNTNKQKKQQGFTLIELMIVVAIIGVLAAVAIPAYQDYVKKSEAASALATLKSLITPAELYYQENGTSTAAGLSDLGSVA
SANDLGTLTSVIGSGSGGVPTLKFAFGSNSSMASTDTLTFSRSATEGWSCARAGTVPAIDGCQ
Nucleotide
Download Length: 432 bp
>NTDB_id=182593 A8140_RS13030 WP_005534039.1 2734637..2735068(+) (pilA) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
ATGAACACGAATAAACAGAAGAAGCAGCAAGGTTTTACTCTGATTGAATTAATGATTGTGGTAGCGATTATTGGTGTTTT
GGCAGCAGTTGCTATACCAGCTTATCAAGACTACGTTAAAAAATCAGAAGCCGCATCAGCTCTTGCTACCTTAAAATCCT
TGATTACTCCGGCTGAACTATATTATCAAGAAAATGGAACGAGCACAGCTGCTGGTCTTTCTGATTTAGGTTCAGTAGCT
TCAGCTAACGATTTAGGCACACTAACATCGGTAATTGGATCTGGTTCAGGTGGAGTACCAACCCTAAAGTTTGCTTTTGG
TTCAAACAGCTCTATGGCCTCGACTGATACTTTAACTTTCTCTCGTAGTGCAACCGAAGGTTGGTCTTGTGCTCGTGCTG
GTACAGTCCCAGCAATTGATGGCTGCCAATAA
ATGAACACGAATAAACAGAAGAAGCAGCAAGGTTTTACTCTGATTGAATTAATGATTGTGGTAGCGATTATTGGTGTTTT
GGCAGCAGTTGCTATACCAGCTTATCAAGACTACGTTAAAAAATCAGAAGCCGCATCAGCTCTTGCTACCTTAAAATCCT
TGATTACTCCGGCTGAACTATATTATCAAGAAAATGGAACGAGCACAGCTGCTGGTCTTTCTGATTTAGGTTCAGTAGCT
TCAGCTAACGATTTAGGCACACTAACATCGGTAATTGGATCTGGTTCAGGTGGAGTACCAACCCTAAAGTTTGCTTTTGG
TTCAAACAGCTCTATGGCCTCGACTGATACTTTAACTTTCTCTCGTAGTGCAACCGAAGGTTGGTCTTGTGCTCGTGCTG
GTACAGTCCCAGCAATTGATGGCTGCCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
60.563 |
99.301 |
0.601 |
| pilA | Pseudomonas aeruginosa PAK |
44.444 |
94.406 |
0.42 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.336 |
95.804 |
0.406 |
| pilA | Vibrio cholerae strain A1552 |
42.336 |
95.804 |
0.406 |
| pilA | Vibrio cholerae C6706 |
42.336 |
95.804 |
0.406 |