Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   A8L59_RS22530 Genome accession   NZ_CP015852
Coordinates   5035362..5036708 (+) Length   448 a.a.
NCBI ID   WP_064589244.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain CRS05-R5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5030362..5041708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L59_RS22505 (A8L59_22485) pgeF 5030574..5031296 (-) 723 WP_064589240.1 peptidoglycan editing factor PgeF -
  A8L59_RS22510 (A8L59_22490) rluD 5031293..5032255 (-) 963 WP_007963852.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A8L59_RS22515 (A8L59_22495) - 5032407..5033426 (+) 1020 WP_064589241.1 outer membrane protein assembly factor BamD -
  A8L59_RS27920 - 5033553..5033786 (+) 234 WP_082920358.1 PP0621 family protein -
  A8L59_RS22525 (A8L59_22505) pilS 5033776..5035365 (+) 1590 WP_064589243.1 ATP-binding protein Regulator
  A8L59_RS22530 (A8L59_22510) pilR 5035362..5036708 (+) 1347 WP_064589244.1 sigma-54-dependent transcriptional regulator Regulator
  A8L59_RS22535 (A8L59_22515) thiO 5036799..5037899 (-) 1101 WP_064589245.1 glycine oxidase ThiO -
  A8L59_RS22540 (A8L59_22520) - 5037958..5038359 (-) 402 WP_064589246.1 type IV pilin protein -
  A8L59_RS22545 (A8L59_22525) - 5038375..5041464 (-) 3090 WP_064589247.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50038.31 Da        Isoelectric Point: 6.8329

>NTDB_id=182509 A8L59_RS22530 WP_064589244.1 5035362..5036708(+) (pilR) [Pseudomonas koreensis strain CRS05-R5]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLQRNAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVNTALRMPAAGGSVTSIDRRLLGDSQPMRTLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAHQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVDDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLEAEVAAGRFRQDLYYRLNVIELRVPSLRERRDDIEALA
THMLQRLASGSGQTAARLHPQALEALKRYRFPGNVRELENVLERAHTLCENQLIEAEDLRLSEGHGAVEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=182509 A8L59_RS22530 WP_064589244.1 5035362..5036708(+) (pilR) [Pseudomonas koreensis strain CRS05-R5]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCGCGTAACCTCGGTGAGGCCCAGGCGCTGTTGCAGCGCAATGCGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCAGACGGCACGGGGCTGGAACTGGTGCAGCACATCCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCGATCAACGCCTTGAAAGCCGGGGCCTTCGACTTCCTCACCAA
ACCGGTCGATCTCACCCGCCTGCGCGAACTGGTCAACACCGCACTGCGCATGCCTGCCGCCGGCGGCAGCGTCACGTCGA
TCGACCGGCGACTGCTGGGTGACTCGCAACCGATGCGCACGCTGCGCAAACAAATCGACAAGCTCGCCCGCAGTCAGGCC
CCGGTCTATATCAGCGGTGAGTCGGGCAGCGGCAAAGAGCTGGTCGCGCGGCTGATTCACGAACAGGGGCCACGCGCCCA
TCAGCCGTTTGTGCCGGTCAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAGTTTTTCGGCCACCGCAAGGGCA
GCTTTACCGGCGCGGTGGACGACAAACCCGGCCTGTTTCAGGCCGCGCACGGCGGCACCCTGTTTCTCGATGAAGTGGCT
GACCTGCCGCTGTCGATGCAGGTCAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTATCGGCGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATTCTCTGTGCCACCCACAAGGACCTCGAAGCGGAAGTCGCCGCCGGGCGCTTCCGCCAGG
ATCTGTATTACCGCTTGAACGTGATCGAACTGCGGGTGCCGTCTTTGCGCGAGCGGCGCGACGACATCGAAGCGCTGGCC
ACGCACATGCTCCAGCGTCTGGCCAGCGGCAGCGGCCAGACCGCTGCGCGCTTGCATCCGCAAGCGCTTGAAGCACTGAA
GCGCTACCGCTTTCCGGGCAATGTACGGGAACTGGAGAATGTCCTCGAACGAGCGCACACGCTGTGCGAAAACCAGTTGA
TCGAAGCTGAGGATTTGCGTCTGAGCGAAGGGCATGGCGCGGTCGAGGGCGGCATTGCCGACCTGACGCAGATCGACAAC
CTTGAGGATTATCTGGAGAACGTCGAACGTAAACTGATCCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAACGCTTGAGTCTGTCGTTCAGGTCGATGCGCTATCGGCTGAAGAAGTTGGGACTGGATTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.555

98.884

0.777
  pilR Acinetobacter baumannii strain A118

47.93

100

0.491
  luxO Vibrio cholerae strain A1552

37.613

99.107

0.373

Multiple sequence alignment