Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   A8L59_RS22525 Genome accession   NZ_CP015852
Coordinates   5033776..5035365 (+) Length   529 a.a.
NCBI ID   WP_064589243.1    Uniprot ID   A0AAC9FYG4
Organism   Pseudomonas koreensis strain CRS05-R5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5028776..5040365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L59_RS22505 (A8L59_22485) pgeF 5030574..5031296 (-) 723 WP_064589240.1 peptidoglycan editing factor PgeF -
  A8L59_RS22510 (A8L59_22490) rluD 5031293..5032255 (-) 963 WP_007963852.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A8L59_RS22515 (A8L59_22495) - 5032407..5033426 (+) 1020 WP_064589241.1 outer membrane protein assembly factor BamD -
  A8L59_RS27920 - 5033553..5033786 (+) 234 WP_082920358.1 PP0621 family protein -
  A8L59_RS22525 (A8L59_22505) pilS 5033776..5035365 (+) 1590 WP_064589243.1 ATP-binding protein Regulator
  A8L59_RS22530 (A8L59_22510) pilR 5035362..5036708 (+) 1347 WP_064589244.1 sigma-54-dependent transcriptional regulator Regulator
  A8L59_RS22535 (A8L59_22515) thiO 5036799..5037899 (-) 1101 WP_064589245.1 glycine oxidase ThiO -
  A8L59_RS22540 (A8L59_22520) - 5037958..5038359 (-) 402 WP_064589246.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58761.47 Da        Isoelectric Point: 6.2733

>NTDB_id=182508 A8L59_RS22525 WP_064589243.1 5033776..5035365(+) (pilS) [Pseudomonas koreensis strain CRS05-R5]
MIAEVDNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDDLLRSGSWLYLVLNILLVVFLEDTRRPAQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLGFSHPLSANDYLQAGTLG
ALCFAASWLVQGLVRRLEVSEHLAEQRASEVISLEALNALILQRMRTGILVLDEQRRVQLANHSAKSLLAQSHLEGHLID
DYSKPLVDRLQLWLNNPTLRPQSLKIPGNGLELQPNFIALEQSPDQQTLVFLEDLAQVAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVAESREQATDR
QLIHLRINSGDFITLMDPDQLTQILDNLLRNGWRHSALLHDPAEVWLVLFIDPDSQLAVLEVQDNGPGVPVDQQPHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=182508 A8L59_RS22525 WP_064589243.1 5033776..5035365(+) (pilS) [Pseudomonas koreensis strain CRS05-R5]
GTGATCGCTGAGGTCGACAACGCCGACAGCAAACAGGCTCAGCGTCTGCTGCGCCTTTATCATCTCTACCGTTTAAGCGT
CGGCATCACGCTGGTGCTGTTGATCTCCAGCAACATGGACAACCGCTTGCTGACGTCGGCCGACGACGACCTGCTGCGCA
GCGGCAGTTGGCTGTATCTGGTGCTGAACATCCTGCTGGTGGTGTTTCTGGAAGACACCCGCCGCCCGGCGCAGCTGTTC
AGCCTGGCGCTGGTGGATGTCCTGCTGCTGTGCGGTTTGTTCTACGCGGCGGGCGGGGTCGCCAGCGCCATCGGCAACCT
GCTGATTGTCTCGGTGGCGATCAGCAACACCTTGCTGCGGCGGCGCATCGGCCTGCTGATTGCCGCCATCGGCGCCCTCG
GCATTGTCGGTTCAAGTTTCCTGCTGGGTTTCAGCCATCCCCTGAGCGCCAATGATTACCTGCAGGCCGGCACCCTCGGC
GCCTTGTGCTTTGCCGCATCGTGGCTGGTCCAGGGCCTGGTCCGGCGTCTGGAAGTCAGCGAGCACCTCGCCGAACAGCG
CGCCAGCGAAGTCATCAGCCTCGAAGCCCTCAACGCCCTGATTCTGCAACGCATGCGCACCGGTATCCTGGTGCTCGACG
AACAGCGCAGGGTGCAACTGGCCAACCACAGCGCGAAAAGCCTGCTGGCCCAGTCGCACCTTGAAGGGCATTTGATCGAC
GACTATTCCAAGCCGCTGGTCGATCGCCTGCAGTTGTGGCTGAACAACCCGACCCTACGCCCGCAAAGCCTGAAGATTCC
CGGCAACGGCCTGGAGCTGCAACCGAACTTCATCGCCCTTGAACAAAGCCCCGACCAGCAAACCCTGGTGTTTCTTGAAG
ATCTGGCGCAAGTCGCCCAGCAAGCCCAGCAGCTCAAACTGGCCGCGCTCGGGCGCCTGACCGCCGGGATTTCCCACGAA
ATCCGCAATCCGCTGGGCGCCATCAGTCATGCCGCGCAGCTATTGGCGGAGTCCGAGGAACTCGATAGCGCTGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAATTGTCACGTCGCCAGC
AGAGCGCTCCGCAACGGCTGGATCTCAAGCCGTGGCTGGAACAGTTCGTCGCCGAAAGCCGCGAACAGGCCACTGACCGG
CAGTTGATTCATTTGCGGATCAATTCCGGGGACTTCATCACGCTGATGGACCCTGACCAGCTCACACAGATTCTCGACAA
CCTGTTACGCAATGGCTGGCGCCACAGCGCGCTGCTGCATGATCCCGCCGAAGTCTGGCTGGTGCTGTTCATCGATCCTG
ACAGCCAGTTGGCGGTGCTCGAAGTCCAGGACAACGGCCCCGGCGTGCCGGTGGATCAACAACCGCATCTGTTCGAACCC
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.245

100

0.594

Multiple sequence alignment