Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | A8L59_RS22430 | Genome accession | NZ_CP015852 |
| Coordinates | 5020994..5021866 (+) | Length | 290 a.a. |
| NCBI ID | WP_064589233.1 | Uniprot ID | A0AAC9BYY8 |
| Organism | Pseudomonas koreensis strain CRS05-R5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5015994..5026866
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8L59_RS22405 (A8L59_22385) | - | 5016194..5016490 (+) | 297 | WP_064589229.1 | DUF2845 domain-containing protein | - |
| A8L59_RS22410 (A8L59_22390) | - | 5016758..5017114 (-) | 357 | WP_007959598.1 | BON domain-containing protein | - |
| A8L59_RS22415 (A8L59_22395) | - | 5017415..5017846 (-) | 432 | WP_064589230.1 | pilin | - |
| A8L59_RS22420 (A8L59_22400) | pilB | 5018072..5019772 (+) | 1701 | WP_064589231.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| A8L59_RS22425 (A8L59_22405) | pilC | 5019775..5020992 (+) | 1218 | WP_064589232.1 | type II secretion system F family protein | Machinery gene |
| A8L59_RS22430 (A8L59_22410) | pilD | 5020994..5021866 (+) | 873 | WP_064589233.1 | prepilin peptidase | Machinery gene |
| A8L59_RS22435 (A8L59_22415) | coaE | 5021863..5022486 (+) | 624 | WP_064589234.1 | dephospho-CoA kinase | - |
| A8L59_RS22440 (A8L59_22420) | yacG | 5022483..5022680 (+) | 198 | WP_003228296.1 | DNA gyrase inhibitor YacG | - |
| A8L59_RS22445 (A8L59_22425) | - | 5022687..5022902 (-) | 216 | WP_064382081.1 | hypothetical protein | - |
| A8L59_RS22450 (A8L59_22430) | - | 5022968..5023657 (-) | 690 | WP_064589235.1 | energy-coupling factor ABC transporter permease | - |
| A8L59_RS22455 (A8L59_22435) | - | 5023654..5024121 (-) | 468 | WP_064590097.1 | hypothetical protein | - |
| A8L59_RS22460 (A8L59_22440) | - | 5024251..5024877 (+) | 627 | WP_003228301.1 | DUF1780 domain-containing protein | - |
| A8L59_RS22465 (A8L59_22445) | - | 5024874..5025401 (+) | 528 | WP_064589236.1 | MOSC domain-containing protein | - |
| A8L59_RS22470 (A8L59_22450) | - | 5025453..5025626 (+) | 174 | WP_064589237.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32115.44 Da Isoelectric Point: 8.1639
>NTDB_id=182507 A8L59_RS22430 WP_064589233.1 5020994..5021866(+) (pilD) [Pseudomonas koreensis strain CRS05-R5]
MPIDELFSLYPLAFLCTALLLGLVVGSFLNVLIWRLPKMLERDWRRQAQDVLGLPTDTPLPTYNLMLPHSACPHCGHRIR
AWENIPLLSYLALRGRCSACATPISKRYPLTELACGLLSAFIAWQVGFGWAACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFAVFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
MPIDELFSLYPLAFLCTALLLGLVVGSFLNVLIWRLPKMLERDWRRQAQDVLGLPTDTPLPTYNLMLPHSACPHCGHRIR
AWENIPLLSYLALRGRCSACATPISKRYPLTELACGLLSAFIAWQVGFGWAACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFAVFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=182507 A8L59_RS22430 WP_064589233.1 5020994..5021866(+) (pilD) [Pseudomonas koreensis strain CRS05-R5]
ATGCCTATCGACGAACTTTTCAGTCTGTATCCGCTGGCCTTTTTGTGCACAGCACTGCTGCTGGGTCTGGTGGTCGGCAG
TTTTCTCAACGTGCTGATCTGGCGTCTGCCGAAAATGCTCGAGCGCGATTGGCGCCGGCAGGCCCAGGACGTCCTCGGCC
TGCCGACCGACACGCCCCTGCCCACCTACAACCTGATGCTGCCGCACTCCGCCTGCCCGCACTGCGGCCATCGTATTCGT
GCGTGGGAGAACATTCCCCTGCTCAGCTATCTGGCCCTGCGCGGGCGCTGCTCCGCTTGCGCCACACCGATCAGCAAGCG
TTATCCCCTGACGGAACTGGCCTGCGGCCTGCTCTCGGCGTTCATCGCCTGGCAGGTGGGTTTTGGCTGGGCGGCGTGCC
TGTTGATCGTCCTCACCTGGGGGCTGCTGGCGATGAGCCTGATCGACACCGAGCATCAACTGCTGCCCGATGTGTTGGTG
CTGCCGTTGCTGTGGCTGGGCTTGATCGTCAACAGTTTCGCGGTATTTGTCTCGCTGCACGCGGCGCTGTGGGGTGCGGT
GGCCGGTTACATGGCGTTGTGGTCAGTGTTCTGGCTATTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCATGGCGATT
TCAAGCTGCTGGCGTTGCTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACGATCCTGCTGTCATCGCTGGTGGGC
GCGATTGTCGGGGTGATTCTGCTGCGTCTGCGCGAACAGAAAACTTCGACGCCGATCCCCTTTGGCCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTTTTCAGTCTGTATCCGCTGGCCTTTTTGTGCACAGCACTGCTGCTGGGTCTGGTGGTCGGCAG
TTTTCTCAACGTGCTGATCTGGCGTCTGCCGAAAATGCTCGAGCGCGATTGGCGCCGGCAGGCCCAGGACGTCCTCGGCC
TGCCGACCGACACGCCCCTGCCCACCTACAACCTGATGCTGCCGCACTCCGCCTGCCCGCACTGCGGCCATCGTATTCGT
GCGTGGGAGAACATTCCCCTGCTCAGCTATCTGGCCCTGCGCGGGCGCTGCTCCGCTTGCGCCACACCGATCAGCAAGCG
TTATCCCCTGACGGAACTGGCCTGCGGCCTGCTCTCGGCGTTCATCGCCTGGCAGGTGGGTTTTGGCTGGGCGGCGTGCC
TGTTGATCGTCCTCACCTGGGGGCTGCTGGCGATGAGCCTGATCGACACCGAGCATCAACTGCTGCCCGATGTGTTGGTG
CTGCCGTTGCTGTGGCTGGGCTTGATCGTCAACAGTTTCGCGGTATTTGTCTCGCTGCACGCGGCGCTGTGGGGTGCGGT
GGCCGGTTACATGGCGTTGTGGTCAGTGTTCTGGCTATTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCATGGCGATT
TCAAGCTGCTGGCGTTGCTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACGATCCTGCTGTCATCGCTGGTGGGC
GCGATTGTCGGGGTGATTCTGCTGCGTCTGCGCGAACAGAAAACTTCGACGCCGATCCCCTTTGGCCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.901 |
97.241 |
0.524 |
| pilD | Vibrio campbellii strain DS40M4 |
51.418 |
97.241 |
0.5 |
| pilD | Neisseria gonorrhoeae MS11 |
49.63 |
93.103 |
0.462 |
| pilD | Acinetobacter baumannii D1279779 |
49.624 |
91.724 |
0.455 |
| pilD | Acinetobacter nosocomialis M2 |
49.624 |
91.724 |
0.455 |