Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A8C75_RS21270 Genome accession   NZ_CP015839
Coordinates   4854714..4855301 (-) Length   195 a.a.
NCBI ID   WP_067386377.1    Uniprot ID   A0A1A9F3K3
Organism   Marinobacterium aestuarii strain ST58-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4849714..4860301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8C75_RS21250 (A8C75_21245) - 4849905..4851035 (-) 1131 WP_067386370.1 BCCT family transporter -
  A8C75_RS21255 (A8C75_21250) betI 4851347..4851931 (+) 585 WP_067386372.1 transcriptional regulator BetI -
  A8C75_RS21260 (A8C75_21255) - 4852029..4852727 (+) 699 WP_067386374.1 haloacid dehalogenase type II -
  A8C75_RS21265 (A8C75_21260) betA 4852771..4854453 (-) 1683 WP_067386376.1 choline dehydrogenase -
  A8C75_RS21270 (A8C75_21265) ssb 4854714..4855301 (-) 588 WP_067386377.1 single-stranded DNA-binding protein Machinery gene
  A8C75_RS21275 (A8C75_21270) - 4855650..4856951 (-) 1302 WP_067386380.1 TRAP transporter large permease -
  A8C75_RS21280 (A8C75_21275) - 4856978..4857541 (-) 564 WP_067386382.1 TRAP transporter small permease subunit -
  A8C75_RS21285 (A8C75_21280) dctP 4857602..4858630 (-) 1029 WP_067386384.1 TRAP transporter substrate-binding protein DctP -
  A8C75_RS21290 (A8C75_21285) - 4858836..4859807 (+) 972 WP_227820037.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21369.31 Da        Isoelectric Point: 4.9746

>NTDB_id=182399 A8C75_RS21270 WP_067386377.1 4854714..4855301(-) (ssb) [Marinobacterium aestuarii strain ST58-10]
MARGVNKVILVGNLGGDPEVRYMPSGNAVTNVTLATSESWKDKNTGQMQERTEWHRVVFFNKLAEIAGEYLRKGSQVYVE
GALRTRKWQDQSGQDKYTTEIVASEMQMLGGRGGSGGGGGADAGDNYNQDTGGGYSQQPQQRSQAPQQRPQQAPQQNYQQ
PQGGQPAPQQRPQQAPQQPQQPAPGFDDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=182399 A8C75_RS21270 WP_067386377.1 4854714..4855301(-) (ssb) [Marinobacterium aestuarii strain ST58-10]
ATGGCACGCGGCGTTAATAAAGTAATTCTGGTAGGCAACCTGGGCGGTGATCCGGAGGTGCGTTACATGCCTTCCGGCAA
TGCGGTGACCAACGTGACTCTGGCGACCAGCGAAAGCTGGAAAGACAAGAACACCGGGCAGATGCAGGAACGCACCGAAT
GGCACCGGGTGGTATTTTTCAACAAGCTGGCCGAAATCGCCGGCGAATACCTGCGCAAGGGCTCCCAGGTCTACGTTGAG
GGCGCGCTGCGCACCCGCAAGTGGCAGGATCAGAGCGGCCAGGACAAGTACACCACCGAAATCGTAGCCAGCGAAATGCA
GATGCTCGGTGGCCGTGGTGGTTCCGGTGGCGGCGGCGGTGCCGACGCAGGTGACAACTACAACCAGGATACGGGTGGTG
GTTATTCTCAGCAGCCGCAGCAGCGCTCCCAGGCACCACAGCAGCGGCCGCAGCAGGCGCCACAGCAGAATTATCAGCAG
CCCCAGGGTGGTCAGCCAGCACCCCAGCAGCGCCCGCAGCAGGCTCCGCAACAGCCGCAGCAGCCGGCGCCGGGCTTTGA
TGATTTTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9F3K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.061

100

0.569
  ssb Glaesserella parasuis strain SC1401

51.562

98.462

0.508
  ssb Neisseria gonorrhoeae MS11

48.731

100

0.492
  ssb Neisseria meningitidis MC58

47.179

100

0.472

Multiple sequence alignment