Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A8A54_RS05130 Genome accession   NZ_CP015775
Coordinates   1069460..1069981 (-) Length   173 a.a.
NCBI ID   WP_064320656.1    Uniprot ID   -
Organism   Brucella pseudogrignonensis strain K8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1064460..1074981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8A54_RS05105 (A8A54_05105) - 1065278..1066447 (-) 1170 WP_064320653.1 carbon-phosphorus lyase complex subunit PhnI -
  A8A54_RS05110 (A8A54_05110) phnH 1066451..1067122 (-) 672 WP_064320654.1 phosphonate C-P lyase system protein PhnH -
  A8A54_RS05115 (A8A54_05115) phnG 1067122..1067538 (-) 417 WP_051063915.1 phosphonate C-P lyase system protein PhnG -
  A8A54_RS05120 (A8A54_05120) phnF 1067794..1068564 (+) 771 WP_064322416.1 phosphonate metabolism transcriptional regulator PhnF -
  A8A54_RS05125 (A8A54_05125) arsC 1068818..1069231 (+) 414 WP_064320655.1 arsenate reductase (glutaredoxin) -
  A8A54_RS05130 (A8A54_05130) ssb 1069460..1069981 (-) 522 WP_064320656.1 single-stranded DNA-binding protein Machinery gene
  A8A54_RS05135 (A8A54_05135) uvrA 1070836..1073760 (+) 2925 WP_064320657.1 excinuclease ABC subunit UvrA -
  A8A54_RS05140 (A8A54_05140) - 1073789..1074562 (-) 774 WP_064320658.1 phosphodiester glycosidase family protein -
  A8A54_RS05145 (A8A54_05145) - 1074671..1074946 (-) 276 WP_007875106.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18675.40 Da        Isoelectric Point: 5.3476

>NTDB_id=182167 A8A54_RS05130 WP_064320656.1 1069460..1069981(-) (ssb) [Brucella pseudogrignonensis strain K8]
MAGSVNKVILVGNLGADPEIRRLNSGDQIANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDGRGEGGGEGRSFGGGGGSNRNQMSDYSGGGGDFGSSGPSNQGGGG
GGFSRDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=182167 A8A54_RS05130 WP_064320656.1 1069460..1069981(-) (ssb) [Brucella pseudogrignonensis strain K8]
ATGGCTGGTAGCGTCAACAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCTGAAATTCGTCGCCTCAATTCAGGTGA
TCAGATCGCCAATCTGCGCATTGCGACTTCGGAAAGCTGGCGCGACCGTCAGACCGGCGAACGCAAGGATCGTACCGAAT
GGCACAGCGTTGTCATTTTCAACGAAAATCTTGCTAAGGTTGCCGAGCAGTATCTGAAAAAGGGTGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGACCAGAACGGCAACGACCGCTACAGCACCGAAATCGTGTTGCAAAAGTT
CCGCGGCGAGCTTCAGATGCTCGATGGCCGTGGTGAAGGCGGCGGCGAAGGTCGCTCATTCGGCGGTGGCGGCGGTAGCA
ATCGCAACCAGATGTCGGATTATTCCGGCGGCGGTGGTGATTTCGGTTCCTCCGGCCCATCCAATCAGGGTGGCGGAGGC
GGTGGTTTCTCCCGCGATCTCGACGACGAAATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.705

100

0.543
  ssb Vibrio cholerae strain A1552

48.588

100

0.497
  ssb Neisseria meningitidis MC58

38.889

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.333

100

0.399

Multiple sequence alignment