Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   B1780_RS05270 Genome accession   NZ_CP019838
Coordinates   1041423..1042430 (+) Length   335 a.a.
NCBI ID   WP_002882690.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain ATCC 33560     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1036423..1047430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1780_RS09470 - 1038105..1040077 (-) 1973 Protein_1023 autotransporter outer membrane beta-barrel domain-containing protein -
  B1780_RS05255 (B1780_05315) - 1040093..1040359 (-) 267 WP_002882691.1 hypothetical protein -
  B1780_RS05265 (B1780_05325) - 1040922..1041332 (-) 411 WP_002862036.1 hypothetical protein -
  B1780_RS05270 (B1780_05330) ruvB 1041423..1042430 (+) 1008 WP_002882690.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  B1780_RS05275 (B1780_05335) amaA 1042434..1043477 (+) 1044 WP_002882689.1 AI-2E family transporter -
  B1780_RS05280 (B1780_05340) fumC 1043507..1044898 (-) 1392 WP_002856014.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37325.87 Da        Isoelectric Point: 4.9081

>NTDB_id=182095 B1780_RS05270 WP_002882690.1 1041423..1042430(+) (ruvB) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=182095 B1780_RS05270 WP_002882690.1 1041423..1042430(+) (ruvB) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCTAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCACCGCTTAAGCCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TCATTATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACTCGT
GCAGGTATGCTTAGCAATCCTTTGCGCGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGACAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGCTTTTAAAAAGGGTAAGAGATTTTGCCGATGTTAATGATGAAGAAATTATCACA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCTAAGCAAAAACCTATCGGACTTGCAAGCATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTATTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGCACGAAAAGC
TATAGTGCTTTAAAATTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.461

99.701

0.693
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.761

97.313

0.513
  ruvB Synechocystis sp. PCC 6803

49.844

95.821

0.478
  ruvB Streptococcus pneumoniae TIGR4

48.328

98.209

0.475
  ruvB Streptococcus pneumoniae R6

48.328

98.209

0.475
  ruvB Streptococcus pneumoniae D39

48.328

98.209

0.475