Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   B1K54_RS07950 Genome accession   NZ_CP019798
Coordinates   1804410..1805483 (-) Length   357 a.a.
NCBI ID   WP_030841637.1    Uniprot ID   -
Organism   Streptomyces sp. fd1-xmd     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799410..1810483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1K54_RS07930 (B1K54_07935) - 1800256..1800810 (-) 555 WP_030841625.1 adenine phosphoribosyltransferase -
  B1K54_RS07935 (B1K54_07940) secF 1800807..1801865 (-) 1059 WP_078093871.1 protein translocase subunit SecF -
  B1K54_RS07940 (B1K54_07945) secD 1801869..1803647 (-) 1779 WP_030841631.1 protein translocase subunit SecD -
  B1K54_RS07945 (B1K54_07950) yajC 1803801..1804244 (-) 444 WP_030841634.1 preprotein translocase subunit YajC -
  B1K54_RS07950 (B1K54_07955) ruvB 1804410..1805483 (-) 1074 WP_030841637.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  B1K54_RS07955 (B1K54_07960) ruvA 1805695..1806318 (-) 624 WP_030841640.1 Holliday junction branch migration protein RuvA -
  B1K54_RS07960 (B1K54_07965) ruvC 1806315..1806872 (-) 558 WP_078093872.1 crossover junction endodeoxyribonuclease RuvC -
  B1K54_RS07965 (B1K54_07970) - 1807079..1807831 (-) 753 WP_030841646.1 YebC/PmpR family DNA-binding transcriptional regulator -
  B1K54_RS07970 (B1K54_07975) pdxT 1807889..1808482 (-) 594 WP_030027909.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  B1K54_RS07975 (B1K54_07980) pdxS 1808490..1809407 (-) 918 WP_030841649.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  B1K54_RS07980 (B1K54_07985) - 1809546..1810088 (-) 543 WP_030841651.1 membrane protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38076.46 Da        Isoelectric Point: 4.8190

>NTDB_id=182002 B1K54_RS07950 WP_030841637.1 1804410..1805483(-) (ruvB) [Streptomyces sp. fd1-xmd]
MNWDDETDATEPDRLVGAAADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAAKQRGATADHVLLSGAPGLGKTTLS
MIIAAEMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRD
YAQVRADGVINREVAATALQVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLVAPQPGASGSTGQQGLFGP

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=182002 B1K54_RS07950 WP_030841637.1 1804410..1805483(-) (ruvB) [Streptomyces sp. fd1-xmd]
GTGAACTGGGACGACGAAACCGACGCCACCGAGCCGGACCGGCTGGTAGGGGCGGCAGCCGACGGTGAGGACACCGCGGT
CGAGGCGGCCCTGCGGCCCAAGGACCTCGGGGAGTTCGTCGGCCAGGAGAAGGTCCGCCAGCAGCTGGACCTGGTCCTGA
AGGCGGCCAAACAGCGCGGGGCCACGGCGGACCACGTCCTGCTGTCCGGCGCGCCCGGACTCGGCAAGACCACCCTCTCC
ATGATCATCGCTGCCGAGATGGCGGCACCCATCCGGATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGACCTCGCCGC
GATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCGGCCGAGGAGATGC
TCTACATGGCCATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGGCCCGGGGCCACCGCCATCCCGCTGGAGCTG
CCCCCCTTCACCCTGGTCGGCGCCACCACGCGGGCCGGACTGCTGCCCCCGCCGCTGCGGGACCGTTTCGGCTTCACCGG
CCACATGGAGTTCTACGCCCCCGAGGAGCTGGAGCGCGTCATCCACCGCTCCGCCCGCCTCCTCGACGTCGAGATCGACA
CCGCCGGCGCGGCCGAGATCGCCGGCCGCTCCCGCGGCACCCCGCGCATCGCCAACCGCCTGCTGCGCCGCGTACGCGAC
TACGCCCAGGTCCGGGCCGACGGGGTGATCAACCGGGAGGTGGCCGCCACCGCCCTCCAGGTGTACGAGGTGGACGCCCG
CGGGCTGGACCGGCTGGATCGAGCCGTTCTGGAGGCACTCCTGAAGCTGTTCGGCGGCGGACCCGTGGGCCTGTCCACCC
TCGCCGTGGCGGTGGGGGAGGAGCGGGAGACCGTCGAGGAGGTCGCGGAGCCCTTCCTGGTCCGCGAGGGCCTGCTCGCG
CGCACCCCCAGGGGACGGGTCGCGACCCCCGCCGCATGGGCTCACCTGGGCCTTGTCGCACCGCAGCCCGGCGCAAGCGG
ATCAACGGGGCAACAGGGCCTGTTCGGGCCCTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)

RuvB AAA lid domain (AAA_lid_4)

(192-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.636

92.437

0.496
  ruvB Streptococcus pneumoniae TIGR4

52.16

90.756

0.473
  ruvB Streptococcus pneumoniae R6

52.16

90.756

0.473
  ruvB Streptococcus pneumoniae D39

52.16

90.756

0.473
  ruvB Synechocystis sp. PCC 6803

52.215

88.515

0.462
  ruvB Helicobacter pylori 26695

48.338

92.717

0.448