Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A7983_RS03415 Genome accession   NZ_CP015750
Coordinates   758191..758736 (+) Length   181 a.a.
NCBI ID   WP_005975000.1    Uniprot ID   -
Organism   Pectobacterium wasabiae CFBP 3304     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 753191..763736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7983_RS03405 (A7983_03405) - 754670..755089 (-) 420 WP_005974995.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A7983_RS03410 (A7983_03410) uvrA 755103..757940 (-) 2838 WP_005974997.1 excinuclease ABC subunit UvrA -
  A7983_RS03415 (A7983_03415) ssb 758191..758736 (+) 546 WP_005975000.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A7983_RS03420 (A7983_03420) - 758986..760827 (+) 1842 WP_005975002.1 amidohydrolase -
  A7983_RS24295 - 760930..761061 (+) 132 Protein_675 GNAT family N-acetyltransferase -
  A7983_RS03425 (A7983_03425) - 761129..761719 (+) 591 WP_039478403.1 hypothetical protein -
  A7983_RS03430 (A7983_03430) - 761847..762278 (-) 432 WP_005975006.1 carboxymuconolactone decarboxylase family protein -
  A7983_RS03435 (A7983_03435) - 762418..762849 (-) 432 WP_005975009.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19156.13 Da        Isoelectric Point: 5.2456

>NTDB_id=181926 A7983_RS03415 WP_005975000.1 758191..758736(+) (ssb) [Pectobacterium wasabiae CFBP 3304]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=181926 A7983_RS03415 WP_005975000.1 758191..758736(+) (ssb) [Pectobacterium wasabiae CFBP 3304]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAACCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAACAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTCGGCAAACTGGCTGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAAGTCTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAAGCTGGCGTAGAGCGTTACACCACCGAAGTGGTCGTTAACGTCGG
CGGTACCATGCAAATGCTGGGTGGACGTCAGGGCGGCGGCGCACCCGCAGGCGGTGGTAATGCAGGTGGCGGCCAGCAAC
AAGGTGGCTGGGGTCAACCTCAGCAACCGCAGGGTGGCAACCAGTTCAGCGGTGGCGCACAAGCTCAGCAGCGCCCAGCG
CAAAATAGCGCCCCTGCGCAAAGCAACGAACCCCCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459

Multiple sequence alignment