Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BXP01_RS05625 Genome accession   NZ_CP019700
Coordinates   1152647..1153657 (+) Length   336 a.a.
NCBI ID   WP_000664450.1    Uniprot ID   -
Organism   Helicobacter pylori strain B128_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1147647..1158657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXP01_RS05600 (BXP01_05595) - 1147834..1149156 (-) 1323 WP_000522712.1 M23 family metallopeptidase -
  BXP01_RS05605 (BXP01_05600) - 1149166..1150107 (-) 942 WP_000770228.1 outer membrane beta-barrel protein -
  BXP01_RS05610 (BXP01_05605) - 1150119..1150973 (-) 855 WP_001861250.1 outer membrane beta-barrel protein -
  BXP01_RS05615 (BXP01_05610) - 1150963..1151685 (-) 723 WP_000523336.1 hypothetical protein -
  BXP01_RS05620 (BXP01_05615) panB 1151834..1152646 (+) 813 WP_000062674.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  BXP01_RS05625 (BXP01_05620) ruvB 1152647..1153657 (+) 1011 WP_000664450.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BXP01_RS05630 (BXP01_05625) tatB 1153725..1154207 (+) 483 WP_000467556.1 Sec-independent protein translocase protein TatB -
  BXP01_RS05635 (BXP01_05630) tatC 1154200..1154949 (+) 750 WP_104929299.1 twin-arginine translocase subunit TatC -
  BXP01_RS05640 (BXP01_05635) queA 1154950..1155987 (+) 1038 WP_104929300.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BXP01_RS05645 (BXP01_05640) rsmG 1155984..1156520 (+) 537 WP_001068835.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BXP01_RS05650 (BXP01_05645) - 1156514..1156744 (+) 231 WP_000944425.1 PP0621 family protein -
  BXP01_RS05655 (BXP01_05650) - 1156747..1157154 (+) 408 WP_000906038.1 hypothetical protein -
  BXP01_RS05665 (BXP01_05660) - 1157286..1157930 (-) 645 WP_000348867.1 outer membrane protein -
  BXP01_RS05670 (BXP01_05665) - 1158184..1158558 (+) 375 WP_000772151.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37282.34 Da        Isoelectric Point: 6.3684

>NTDB_id=181727 BXP01_RS05625 WP_000664450.1 1152647..1153657(+) (ruvB) [Helicobacter pylori strain B128_1]
MKERIVNLETLDFEISQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESTDEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=181727 BXP01_RS05625 WP_000664450.1 1152647..1153657(+) (ruvB) [Helicobacter pylori strain B128_1]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAATTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATCTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTTATTGGCGCTACCACT
AGAGCTGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCTCTCATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCACTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTGAAAAGGGTGCGCGATTTTGCACTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.917

100

0.979
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.251

96.131

0.512
  ruvB Streptococcus pneumoniae TIGR4

50.155

96.131

0.482
  ruvB Streptococcus pneumoniae R6

50.155

96.131

0.482
  ruvB Streptococcus pneumoniae D39

50.155

96.131

0.482
  ruvB Synechocystis sp. PCC 6803

52.145

90.179

0.47