Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | PS273GM_RS22250 | Genome accession | NZ_CP015641 |
| Coordinates | 4845048..4845365 (-) | Length | 105 a.a. |
| NCBI ID | WP_064482558.1 | Uniprot ID | - |
| Organism | Stutzerimonas stutzeri strain 273 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4840048..4850365
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS273GM_RS22215 (PS273GM_22215) | - | 4840346..4840788 (-) | 443 | Protein_4419 | Hsp20 family protein | - |
| PS273GM_RS22220 (PS273GM_22220) | - | 4840905..4841651 (+) | 747 | WP_064482557.1 | SDR family oxidoreductase | - |
| PS273GM_RS22225 (PS273GM_22225) | - | 4841648..4842622 (-) | 975 | WP_064482847.1 | tRNA dihydrouridine synthase | - |
| PS273GM_RS22230 (PS273GM_22230) | - | 4842789..4843256 (-) | 468 | WP_045426066.1 | tetratricopeptide repeat protein | - |
| PS273GM_RS22235 (PS273GM_22235) | - | 4843256..4843651 (-) | 396 | WP_045426063.1 | hypothetical protein | - |
| PS273GM_RS22240 (PS273GM_22240) | - | 4843633..4843965 (-) | 333 | WP_045426060.1 | helix-turn-helix domain-containing protein | - |
| PS273GM_RS22245 (PS273GM_22245) | - | 4844108..4844575 (-) | 468 | WP_045426057.1 | YkvA family protein | - |
| PS273GM_RS22250 (PS273GM_22250) | comEA/comE1 | 4845048..4845365 (-) | 318 | WP_064482558.1 | ComEA family DNA-binding protein | Machinery gene |
| PS273GM_RS22255 (PS273GM_22255) | flgL | 4845492..4846766 (-) | 1275 | WP_045426052.1 | flagellar hook-associated protein FlgL | - |
| PS273GM_RS22260 (PS273GM_22260) | flgK | 4846778..4848850 (-) | 2073 | WP_064482559.1 | flagellar hook-associated protein FlgK | - |
| PS273GM_RS22265 (PS273GM_22265) | flgJ | 4848853..4850052 (-) | 1200 | WP_045426047.1 | flagellar assembly peptidoglycan hydrolase FlgJ | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 10795.44 Da Isoelectric Point: 9.7693
>NTDB_id=181666 PS273GM_RS22250 WP_064482558.1 4845048..4845365(-) (comEA/comE1) [Stutzerimonas stutzeri strain 273]
MLKSFISASIFALLAGVSLSSFAGPTKSADPVVVATAQQAAPININSADAETLTRELKGIGATKAKAIVAYREAHGPFTA
VDELLEVKGIGAATLEKNRNKLGVN
MLKSFISASIFALLAGVSLSSFAGPTKSADPVVVATAQQAAPININSADAETLTRELKGIGATKAKAIVAYREAHGPFTA
VDELLEVKGIGAATLEKNRNKLGVN
Nucleotide
Download Length: 318 bp
>NTDB_id=181666 PS273GM_RS22250 WP_064482558.1 4845048..4845365(-) (comEA/comE1) [Stutzerimonas stutzeri strain 273]
ATGCTTAAGTCATTTATATCCGCTTCAATATTCGCACTGCTCGCTGGCGTCTCTCTCAGCAGTTTCGCTGGCCCGACCAA
GTCTGCTGACCCCGTAGTGGTTGCAACGGCCCAGCAAGCTGCGCCGATCAACATCAATTCGGCCGACGCCGAAACCCTGA
CCCGCGAACTCAAGGGTATTGGCGCAACAAAGGCCAAGGCGATCGTTGCTTATCGCGAAGCGCATGGCCCATTCACCGCC
GTCGATGAGCTCCTCGAAGTTAAAGGAATCGGTGCGGCCACTTTAGAAAAAAATCGAAACAAACTGGGCGTTAACTGA
ATGCTTAAGTCATTTATATCCGCTTCAATATTCGCACTGCTCGCTGGCGTCTCTCTCAGCAGTTTCGCTGGCCCGACCAA
GTCTGCTGACCCCGTAGTGGTTGCAACGGCCCAGCAAGCTGCGCCGATCAACATCAATTCGGCCGACGCCGAAACCCTGA
CCCGCGAACTCAAGGGTATTGGCGCAACAAAGGCCAAGGCGATCGTTGCTTATCGCGAAGCGCATGGCCCATTCACCGCC
GTCGATGAGCTCCTCGAAGTTAAAGGAATCGGTGCGGCCACTTTAGAAAAAAATCGAAACAAACTGGGCGTTAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
48.571 |
100 |
0.486 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
45.918 |
93.333 |
0.429 |
| comEA | Vibrio cholerae C6706 |
50.649 |
73.333 |
0.371 |
| comEA | Vibrio cholerae strain A1552 |
50.649 |
73.333 |
0.371 |