Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PS273GM_RS03395 Genome accession   NZ_CP015641
Coordinates   753118..754458 (+) Length   446 a.a.
NCBI ID   WP_064482670.1    Uniprot ID   A0A172WWT6
Organism   Stutzerimonas stutzeri strain 273     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 748118..759458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS273GM_RS03370 (PS273GM_03370) pgeF 748129..748863 (-) 735 WP_064480588.1 peptidoglycan editing factor PgeF -
  PS273GM_RS03375 (PS273GM_03375) rluD 748860..749834 (-) 975 WP_045424455.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PS273GM_RS03380 (PS273GM_03380) - 750124..751131 (+) 1008 WP_064480589.1 outer membrane protein assembly factor BamD -
  PS273GM_RS03385 (PS273GM_03385) - 751192..751428 (+) 237 WP_064480590.1 PP0621 family protein -
  PS273GM_RS03390 (PS273GM_03390) pilS 751418..753010 (+) 1593 WP_064480591.1 sensor histidine kinase Regulator
  PS273GM_RS03395 (PS273GM_03395) pilR 753118..754458 (+) 1341 WP_064482670.1 sigma-54-dependent transcriptional regulator Regulator
  PS273GM_RS03400 (PS273GM_03400) - 754498..755553 (-) 1056 WP_046163163.1 DUF2333 family protein -
  PS273GM_RS03405 (PS273GM_03405) - 755771..757384 (+) 1614 WP_064480592.1 response regulator -
  PS273GM_RS24230 (PS273GM_03410) - 757432..759396 (+) 1965 WP_064480593.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49957.63 Da        Isoelectric Point: 6.5139

>NTDB_id=181642 PS273GM_RS03395 WP_064482670.1 753118..754458(+) (pilR) [Stutzerimonas stutzeri strain 273]
MTVRQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEAKECLAREHYDLCLTDMRLPDGCGLELVQFIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRTPNPNELTVDSRLLGASPPMNVLRKQIGKLARSQAPV
YISGESGSGKELVARLIHEQGPRHERPFVPVNCGAIPSELMESEFFGHKKGSFTGAMEDKPGLFQAANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRSVGGAKEVVVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEV
MLRRLAQECGDTPARLQPDALAKLQSYRFPGNVRELENMLERAYTLCEGEEIKPSDLRLSEAPGMPENGEASLAQIDNLE
DHLEEVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=181642 PS273GM_RS03395 WP_064482670.1 753118..754458(+) (pilR) [Stutzerimonas stutzeri strain 273]
ATGACCGTTCGCCAGAAAGCACTGATCATCGATGACGAACCCGATATCCGTGAGCTCCTGGAGATCACCCTCGGACGCAT
GAAGCTCGACACCCGCAGCGCCCGCAACCTCAAGGAAGCCAAGGAGTGCCTGGCGCGCGAGCACTACGATCTGTGCCTGA
CCGATATGCGGCTGCCTGACGGATGCGGTTTGGAGCTGGTGCAGTTCATTCAGCAGCAGTACCCGCAATTGCCGGTCGCG
ATGATCACCGCCTATGGCAGTTTGGACACGGCCATTGGGGCGCTCAAGGCCGGGGCCTTCGACTTTCTCACCAAACCGGT
GGATCTCGGTCGGCTCCGCGAACTGGTCAATACCGCGCTGCGGCTGCGCACGCCGAACCCAAACGAACTTACAGTCGACA
GCCGCTTACTCGGCGCCTCGCCGCCGATGAATGTGCTGCGCAAACAGATCGGGAAACTGGCGCGCAGCCAGGCACCGGTG
TACATCAGTGGCGAATCCGGCAGTGGCAAGGAATTGGTCGCGCGGCTGATCCACGAGCAAGGGCCCCGTCACGAACGGCC
ATTCGTTCCGGTCAACTGCGGTGCGATTCCCTCGGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAGGGCAGCTTTA
CCGGGGCGATGGAAGATAAGCCCGGGCTGTTCCAGGCAGCCAATGGCGGCACGCTGTTTCTCGATGAAGTAGCCGATCTG
CCTCTGCCGATGCAAGTGAAACTGCTGCGGGCGATCCAGGAAAAGGCCGTGCGCTCAGTTGGCGGCGCCAAGGAAGTCGT
GGTCGATGTGCGGATTCTTTGCGCCACCCACAAGGACCTGGCAAGCGAAGTCGCCGCGGGACGCTTTCGGCAGGACCTCT
ACTACCGGCTGAACGTCATCGAATTACGCGTGCCGCCCCTGCGCGAGCGCCGCGAGGATATTGCCCAGCTGGCCGAGGTG
ATGCTTCGCCGCCTCGCCCAGGAATGCGGCGACACGCCGGCCCGGCTGCAACCCGATGCGCTGGCAAAACTGCAGAGTTA
TCGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATGCTTGAGCGTGCCTACACGCTCTGTGAAGGCGAAGAAATCAAAC
CCAGCGACCTGCGGCTTTCCGAAGCACCAGGCATGCCGGAGAATGGCGAAGCAAGCCTGGCGCAGATCGACAATCTTGAA
GACCACCTCGAAGAGGTCGAGCGCAAACTGATCATGCAGGCGCTGGAAGAAACCCGTTGGAATCGCACCGCCGCCGCCCA
ACGGCTGGGGCTGTCGTTCCGCTCCATGCGGTATCGGCTGAAGAAGCTGGGGCTCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172WWT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

83.521

99.327

0.83
  pilR Acinetobacter baumannii strain A118

49.455

100

0.509
  luxO Vibrio cholerae strain A1552

38.702

100

0.388

Multiple sequence alignment