Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PS273GM_RS03390 Genome accession   NZ_CP015641
Coordinates   751418..753010 (+) Length   530 a.a.
NCBI ID   WP_064480591.1    Uniprot ID   A0A172WLG5
Organism   Stutzerimonas stutzeri strain 273     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 746418..758010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS273GM_RS03370 (PS273GM_03370) pgeF 748129..748863 (-) 735 WP_064480588.1 peptidoglycan editing factor PgeF -
  PS273GM_RS03375 (PS273GM_03375) rluD 748860..749834 (-) 975 WP_045424455.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PS273GM_RS03380 (PS273GM_03380) - 750124..751131 (+) 1008 WP_064480589.1 outer membrane protein assembly factor BamD -
  PS273GM_RS03385 (PS273GM_03385) - 751192..751428 (+) 237 WP_064480590.1 PP0621 family protein -
  PS273GM_RS03390 (PS273GM_03390) pilS 751418..753010 (+) 1593 WP_064480591.1 sensor histidine kinase Regulator
  PS273GM_RS03395 (PS273GM_03395) pilR 753118..754458 (+) 1341 WP_064482670.1 sigma-54-dependent transcriptional regulator Regulator
  PS273GM_RS03400 (PS273GM_03400) - 754498..755553 (-) 1056 WP_046163163.1 DUF2333 family protein -
  PS273GM_RS03405 (PS273GM_03405) - 755771..757384 (+) 1614 WP_064480592.1 response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59085.19 Da        Isoelectric Point: 8.1591

>NTDB_id=181641 PS273GM_RS03390 WP_064480591.1 751418..753010(+) (pilS) [Stutzerimonas stutzeri strain 273]
MGTEHLTFFGYKGRRILRLYHLYRVVIGLVLVLLISSDLHNDLMRMTNPTAFYYGAWLYLILNVFAAVLLQNPKRELPVL
ALALVDVTLLAALFYFAGGTPSGIGNLLIVAVAIANILLHGRVGFFIAAVAATGLIYLTFYLSLSDSAASSQYVQAAALG
TLCFAAALLVQGLTRRLQDSETLARQRAEEVANLEALNAQILQRMRTGILVLDAQERVLLANQGALELLGQQSLTGERLA
PRCPEIIKGLQRWRDNPTLRPRNFKATPDGATLQPSFATLQHGVKQDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEVLDAADLRLTQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWVHRFASEFRQTLPPQ
QIVHVDTLGSSLQTRMDPNQLIQVLTNLVQNGLRYSGQKHDQAQVWLKLFRDETSDLPVLEVLDDGAGVPAEQVQNIFEP
FFTTENKGTGLGLYISRELCESNQARLDYRERDEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=181641 PS273GM_RS03390 WP_064480591.1 751418..753010(+) (pilS) [Stutzerimonas stutzeri strain 273]
GTGGGAACTGAACACCTGACGTTTTTCGGTTACAAGGGCCGACGAATCCTTCGGCTCTATCATCTCTATCGCGTCGTAAT
CGGCTTGGTGCTGGTTCTGCTCATTAGCAGCGACCTTCACAACGATTTGATGCGCATGACCAACCCGACGGCGTTCTACT
ACGGCGCCTGGCTCTATCTGATTCTCAACGTCTTCGCAGCCGTACTGCTGCAGAACCCCAAGCGGGAACTGCCGGTGTTG
GCGCTCGCGCTGGTGGACGTCACGCTGCTGGCCGCGCTGTTCTACTTCGCGGGCGGTACGCCAAGTGGTATCGGTAACCT
GCTGATCGTAGCGGTCGCCATTGCCAATATCTTGCTGCACGGCCGCGTCGGCTTTTTCATCGCTGCAGTCGCCGCCACCG
GACTCATCTACCTGACGTTCTACCTCAGCCTCAGCGACAGCGCGGCGAGCAGTCAGTATGTTCAGGCCGCCGCGCTTGGC
ACGCTGTGCTTCGCTGCCGCGTTGCTGGTGCAGGGCCTGACCAGACGACTTCAGGACAGCGAAACCCTTGCCCGCCAGCG
CGCCGAAGAGGTCGCCAATCTTGAAGCCTTGAATGCCCAGATTCTGCAGCGCATGCGCACTGGCATCCTCGTTCTCGATG
CACAGGAACGCGTGCTGCTAGCCAATCAGGGCGCTCTTGAGCTGCTCGGACAACAGTCACTGACTGGCGAACGACTAGCG
CCGCGCTGCCCGGAAATTATCAAGGGCCTGCAACGCTGGCGTGACAATCCGACCCTGCGGCCGCGCAACTTCAAGGCCAC
GCCTGACGGCGCTACCTTGCAGCCGAGCTTCGCTACGCTGCAGCATGGCGTGAAGCAGGACACGCTGGTGTTTCTTGAAG
ACATCTCGCAGATCGCACAGAAGGCCCAGCAGCTAAAACTCGCGTCGCTCGGGCGGCTGACCGCCAGCATCGCCCACGAA
ATCCGCAACCCGCTCGGGGCGATCAGCCATGCCGCCCAGCTGCTGCAGGAATCAGAGGTGCTGGACGCTGCGGATTTACG
GCTGACGCAGATCATTCAGGATCACTCGCGGCGCATGAACCTGGTCATCGAGAATGTGCTGCAGCTGTCGCGCCGACGCC
AGGCCGAGCCACAACTGCTGGACCTGAAATACTGGGTGCATCGATTCGCCAGCGAATTTCGCCAGACGCTACCGCCTCAG
CAAATTGTCCACGTGGATACCCTAGGCAGCTCACTGCAAACCCGCATGGACCCGAATCAACTGATTCAAGTGCTAACCAA
TCTGGTGCAGAACGGCCTGCGCTACAGTGGCCAGAAACATGACCAGGCACAGGTATGGCTGAAGCTCTTCCGAGACGAGA
CGAGCGACCTCCCCGTACTGGAGGTACTCGACGATGGTGCAGGCGTGCCGGCCGAGCAGGTCCAGAATATCTTCGAGCCG
TTCTTCACCACTGAGAACAAGGGTACGGGGCTGGGGCTGTATATCTCGCGCGAGCTCTGCGAAAGCAATCAGGCGCGGCT
GGATTACCGTGAACGAGACGAGGGAGGCAGCTGCTTTCGTATCGTCTTTGCGCATCCGCGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(201-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172WLG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.151

100

0.642

Multiple sequence alignment