Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A7318_RS23710 | Genome accession | NZ_CP015639 |
| Coordinates | 5222021..5222536 (+) | Length | 171 a.a. |
| NCBI ID | WP_003232445.1 | Uniprot ID | A0A0W0N9K8 |
| Organism | Pseudomonas lurida strain L228 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5217021..5227536
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7318_RS23695 (A7318_23675) | bfr | 5217074..5217538 (+) | 465 | WP_015886133.1 | bacterioferritin | - |
| A7318_RS23700 (A7318_23680) | uvrA | 5217604..5220438 (-) | 2835 | WP_069078326.1 | excinuclease ABC subunit UvrA | - |
| A7318_RS23705 (A7318_23685) | - | 5220617..5222011 (+) | 1395 | WP_034109553.1 | MFS transporter | - |
| A7318_RS23710 (A7318_23690) | ssb | 5222021..5222536 (+) | 516 | WP_003232445.1 | single-stranded DNA-binding protein | Machinery gene |
| A7318_RS23715 (A7318_23695) | - | 5222664..5223905 (+) | 1242 | WP_069078327.1 | tyrosine-type recombinase/integrase | - |
| A7318_RS23720 (A7318_23700) | - | 5224346..5225173 (+) | 828 | WP_069078328.1 | site-specific integrase | - |
| A7318_RS29645 | - | 5225205..5225477 (+) | 273 | WP_145980389.1 | hypothetical protein | - |
| A7318_RS23725 (A7318_23705) | - | 5225470..5227470 (+) | 2001 | WP_217268048.1 | integrase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19015.19 Da Isoelectric Point: 5.9455
>NTDB_id=181625 A7318_RS23710 WP_003232445.1 5222021..5222536(+) (ssb) [Pseudomonas lurida strain L228]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF
Nucleotide
Download Length: 516 bp
>NTDB_id=181625 A7318_RS23710 WP_003232445.1 5222021..5222536(+) (ssb) [Pseudomonas lurida strain L228]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAGGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGCCCACAGCCAAGCCAGCAGCCGCAGCGTGAGTCGCGCCCAGCGCCACAACAGGCCGCCCCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAG
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAGGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGCCCACAGCCAAGCCAGCAGCCGCAGCGTGAGTCGCGCCCAGCGCCACAACAGGCCGCCCCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.659 |
100 |
0.614 |
| ssb | Glaesserella parasuis strain SC1401 |
45.833 |
100 |
0.515 |
| ssb | Neisseria gonorrhoeae MS11 |
47.753 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
46.023 |
100 |
0.474 |