Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   AsACE_RS13060 Genome accession   NZ_CP015615
Coordinates   2694359..2695078 (-) Length   239 a.a.
NCBI ID   WP_026056744.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain ACE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2689359..2700078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS13040 (AsACE_CH02596) aroB 2689970..2691049 (-) 1080 WP_076754494.1 3-dehydroquinate synthase -
  AsACE_RS16585 (AsACE_CH02597) aroK 2691077..2691613 (-) 537 WP_004810003.1 shikimate kinase AroK -
  AsACE_RS13050 (AsACE_CH02598) pilQ 2691650..2693815 (-) 2166 WP_076754497.1 type IV pilus secretin PilQ family protein Machinery gene
  AsACE_RS13055 (AsACE_CH02599) pilP 2693832..2694359 (-) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  AsACE_RS13060 (AsACE_CH02600) comO 2694359..2695078 (-) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  AsACE_RS13065 (AsACE_CH02601) comN 2695072..2695713 (-) 642 WP_076754499.1 PilN domain-containing protein Machinery gene
  AsACE_RS13070 (AsACE_CH02602) pilM 2695713..2696771 (-) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  AsACE_RS13075 (AsACE_CH02603) ponA 2696941..2699469 (+) 2529 WP_076754501.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26948.52 Da        Isoelectric Point: 4.6463

>NTDB_id=181536 AsACE_RS13060 WP_026056744.1 2694359..2695078(-) (comO) [Acinetobacter schindleri strain ACE]
MMSEQFDELGQEAVVVPKNKMTVEKFFQQFNTLDPNNYGSWPLAVKITCWVFIVFLVLMLAYFGLIRGKIESITQANAQE
QNLLNEFREKDSKLRNLQQYQQQLQDMEASFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQP
ISIEATGDYHAFGSFVSGIAGLSRIVTLHDFTITGTENKEKKTDIPVVDYTLKAKTYRYVGSANSASADTTAANSQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=181536 AsACE_RS13060 WP_026056744.1 2694359..2695078(-) (comO) [Acinetobacter schindleri strain ACE]
ATCATGAGCGAACAATTTGATGAATTAGGTCAGGAAGCTGTTGTTGTACCAAAAAATAAAATGACGGTAGAAAAGTTTTT
TCAGCAATTTAATACCCTCGATCCAAATAACTATGGTAGCTGGCCACTGGCTGTAAAGATTACCTGCTGGGTATTTATTG
TTTTCCTGGTTTTGATGCTGGCTTATTTCGGTCTGATTCGAGGCAAGATTGAATCAATTACTCAGGCCAATGCACAAGAA
CAGAATCTGTTAAATGAATTTCGTGAGAAAGATTCCAAACTGCGTAATTTGCAACAATACCAACAGCAACTTCAGGATAT
GGAAGCAAGCTTTAACCAGCAGCTTGAACAGTTACCAAAGGAAACTGAAATCCCAGGCCTGGTTGAAGATATTAATTTGA
GTGGTGTCAATGCCGGACTGAAGTTTAAGAATATCCGTCTTGAACCTGAAGTAAAGCAAGAGTTCTTTATTGAACAGCCA
ATTTCTATTGAAGCAACGGGTGATTATCATGCCTTTGGTTCATTTGTCAGCGGTATTGCAGGATTGTCTCGTATCGTGAC
GCTACACGACTTTACGATTACGGGTACTGAAAATAAAGAGAAGAAAACAGATATCCCGGTTGTAGATTATACCTTGAAGG
CAAAAACCTATCGTTATGTCGGTAGTGCGAACTCAGCATCGGCAGATACAACAGCTGCGAATAGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.362

98.326

0.682
  pilO Acinetobacter baumannii D1279779

68.584

94.561

0.649

Multiple sequence alignment