Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AsACE_RS13050 Genome accession   NZ_CP015615
Coordinates   2691650..2693815 (-) Length   721 a.a.
NCBI ID   WP_076754497.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain ACE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2686650..2698815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS13035 (AsACE_CH02595) - 2689114..2689956 (-) 843 WP_076754491.1 hypothetical protein -
  AsACE_RS13040 (AsACE_CH02596) aroB 2689970..2691049 (-) 1080 WP_076754494.1 3-dehydroquinate synthase -
  AsACE_RS16585 (AsACE_CH02597) aroK 2691077..2691613 (-) 537 WP_004810003.1 shikimate kinase AroK -
  AsACE_RS13050 (AsACE_CH02598) pilQ 2691650..2693815 (-) 2166 WP_076754497.1 type IV pilus secretin PilQ family protein Machinery gene
  AsACE_RS13055 (AsACE_CH02599) pilP 2693832..2694359 (-) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  AsACE_RS13060 (AsACE_CH02600) comO 2694359..2695078 (-) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  AsACE_RS13065 (AsACE_CH02601) comN 2695072..2695713 (-) 642 WP_076754499.1 PilN domain-containing protein Machinery gene
  AsACE_RS13070 (AsACE_CH02602) pilM 2695713..2696771 (-) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78287.53 Da        Isoelectric Point: 5.1414

>NTDB_id=181534 AsACE_RS13050 WP_076754497.1 2691650..2693815(-) (pilQ) [Acinetobacter schindleri strain ACE]
MNKSFKEFIFGDANTMNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSSIAVATKEASSVDVTSDAQRARLTVNLADAGAFTTRVEGNTFILKINSTNPVIPVQPVVQQNTQGIT
NIGFQRGAKGEGQVVIDLASGNTPVDVQQQGTKVIVRALGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVVTIQTSD
SYEYMAYQTDNKLTISLKRPEEKNPLRPKAAQHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKAEEEEAKALAQSVKLAPIQTEYMQLSYAKAADIEKLITQNKGASSA
GSNTGSTSGDDKESLLSSRGSISIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRASTEFTKEIGVKWGI
LSQGITNNNNLLVGGSDTTLWDLRDPQESDLGGYTYDIQRPDNLNVDLGVANPAGRIAFGLISLSDFMLDLELSALQADG
YGEVISTPKVLTADKQAAKVSSGTQIPYQSSEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMLLNITSDTPGNPTPT
GQLTINKNQISTNVLVDNGETVVLGGIFEQETRNGQTKVPFLGDIPYLGHLFRRDLKSDNKRELLIFVTPRIVNDSVSRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=181534 AsACE_RS13050 WP_076754497.1 2691650..2693815(-) (pilQ) [Acinetobacter schindleri strain ACE]
ATGAATAAAAGTTTTAAAGAATTTATTTTTGGGGATGCTAATACAATGAATCATGTGTTTCGTCAGTTTTCAATGGGGGC
AGTTGCCATTGCTGTTATGCAGGCGGCAAGTGCACAGGTTTCGATGACCAATGTGGTACCAATGCAGATTCCAGGACAAG
GTACTGAAATTCGCGTGATGTTTAATGGCTTGCCACCTCAACCACAAGCTTATCAATTAGAATCACCATCACGTCTGATT
CTGGATTTTGATAAAGCACAGCAGAATTTAAAACAAAGCAGTATTGCTGTTGCAACGAAAGAAGCAAGTTCTGTAGATGT
GACTTCAGATGCTCAGCGTGCACGTTTAACTGTGAATCTGGCAGATGCAGGTGCATTTACCACACGTGTTGAAGGCAATA
CCTTTATTCTAAAAATTAATTCAACCAATCCAGTTATCCCTGTACAGCCAGTCGTACAACAAAATACTCAAGGCATTACC
AATATCGGGTTCCAGCGCGGGGCGAAAGGTGAAGGTCAGGTCGTGATCGATCTGGCGAGTGGTAATACACCGGTTGATGT
ACAACAGCAAGGCACTAAAGTTATTGTACGGGCATTAGGCTCCAAGATCCCGGCACATTTAACCCGTCGTCTGAATGTGA
ATGATTTTGCTACACCTGTTTCGACAGTAGATGCGGTCAACCAGAATGGCTCTGGAGTGGTTACCATTCAAACTTCAGAT
AGCTATGAATACATGGCTTATCAAACCGATAATAAACTGACAATTAGTTTAAAGCGCCCAGAAGAGAAAAATCCATTACG
TCCAAAAGCTGCTCAACATTATACTGGTAAGAAAATTTCTTTAGATTTTCAGGATATTGAAGTTCGCCGAGTATTACAGC
TACTAGCAGATTTCACTGACATTAATATGGTTGCAGCAGACAGCGTACAAGGCAATATTACTTTGCGTCTTAAGGAAGTG
CCTTGGGATCAGGCTTTAGATATCGTTTTAAAGACCAAGAATTTGGATAAGCGCCGTAATGGGAATGTAATCTGGATCGC
GCCTGTATCTGAGCTCATTAAAGCTGAAGAGGAAGAAGCTAAAGCACTTGCACAAAGTGTAAAGCTGGCTCCTATTCAGA
CAGAGTATATGCAACTCAGTTATGCCAAAGCAGCTGATATTGAAAAGCTCATCACGCAGAATAAAGGGGCCTCAAGTGCC
GGTTCTAATACAGGCAGTACAAGTGGAGATGATAAGGAGAGTCTACTGAGTTCACGTGGTTCTATTTCTATTGATGCACG
TACCAATACTTTAATTGTAAATGATACTCAGCCTTTTATCGATAAAATCCGCAATATGGTGGATCTGCTTGATGTACAGG
TAAAGCAGGTCATGGTTGAAGCACGTATTGTGCGTGCATCGACTGAATTCACCAAAGAAATCGGGGTGAAATGGGGAATT
CTTTCTCAGGGCATTACTAATAATAATAATCTATTAGTGGGTGGAAGTGACACTACACTTTGGGATTTGCGTGATCCTCA
AGAAAGTGATTTAGGTGGATATACCTATGATATTCAACGCCCAGATAATTTGAATGTTGACTTGGGTGTTGCAAACCCTG
CTGGTCGAATTGCTTTTGGCTTGATTAGCTTATCTGACTTTATGTTAGATCTGGAGCTTTCTGCTTTACAAGCAGATGGT
TATGGTGAAGTGATCTCAACACCTAAAGTTTTAACAGCAGATAAGCAGGCGGCTAAAGTTTCATCAGGTACACAAATTCC
GTATCAATCTTCAGAAGGGGGTGGTGCAAATGCAGTTTCAACTACTGAATTTATTGATGCAACCCTCAGCTTAGATGTAA
CTCCTAGTATTACACCTGACGGTAAAGTTCAGATGCTGCTCAATATTACCAGTGATACTCCTGGAAACCCCACTCCAACG
GGTCAATTAACGATTAATAAAAATCAAATTAGTACTAATGTGCTGGTTGATAATGGAGAAACGGTAGTTTTGGGGGGGAT
TTTTGAGCAAGAAACACGGAATGGACAAACTAAAGTACCTTTCTTGGGAGATATTCCATATTTAGGTCATTTATTTCGTA
GAGATCTTAAATCTGACAATAAGCGTGAGCTCCTGATTTTTGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(306-348)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

AMIN domain (AMIN)

(55-135)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.341

100

0.743
  pilQ Acinetobacter baumannii strain A118

74.202

100

0.742
  comQ Acinetobacter baylyi ADP1

69.134

99.307

0.687
  pilQ Pseudomonas aeruginosa PAK

41.523

96.533

0.401
  pilQ Legionella pneumophila strain Lp02

37.429

98.197

0.368
  pilQ Legionella pneumophila strain ERS1305867

37.679

96.81

0.365

Multiple sequence alignment