Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   AsACE_RS13065 Genome accession   NZ_CP015615
Coordinates   2695072..2695713 (-) Length   213 a.a.
NCBI ID   WP_076754499.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain ACE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2690072..2700713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS16585 (AsACE_CH02597) aroK 2691077..2691613 (-) 537 WP_004810003.1 shikimate kinase AroK -
  AsACE_RS13050 (AsACE_CH02598) pilQ 2691650..2693815 (-) 2166 WP_076754497.1 type IV pilus secretin PilQ family protein Machinery gene
  AsACE_RS13055 (AsACE_CH02599) pilP 2693832..2694359 (-) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  AsACE_RS13060 (AsACE_CH02600) comO 2694359..2695078 (-) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  AsACE_RS13065 (AsACE_CH02601) comN 2695072..2695713 (-) 642 WP_076754499.1 PilN domain-containing protein Machinery gene
  AsACE_RS13070 (AsACE_CH02602) pilM 2695713..2696771 (-) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  AsACE_RS13075 (AsACE_CH02603) ponA 2696941..2699469 (+) 2529 WP_076754501.1 penicillin-binding protein PBP1a -
  AsACE_RS13080 (AsACE_CH02604) - 2699541..2700344 (-) 804 WP_076754504.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23749.99 Da        Isoelectric Point: 4.7690

>NTDB_id=181537 AsACE_RS13065 WP_076754499.1 2695072..2695713(-) (comN) [Acinetobacter schindleri strain ACE]
MAKINLLPWRDELRIKRNNEFVAYCVGALLLGMTAAGGSWFYYDQKLQDQEQANQLIISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSDMYITKFDRVGDKFTIEGKAASPNTVAELLRNLEASTWYRNAFMNAFLV
AEESKDKAPSSVIPRVEESYGTFTVTVDLDQIAQPVLSEQQPQAAAAAGGATS

Nucleotide


Download         Length: 642 bp        

>NTDB_id=181537 AsACE_RS13065 WP_076754499.1 2695072..2695713(-) (comN) [Acinetobacter schindleri strain ACE]
ATGGCAAAAATTAACTTACTTCCTTGGCGTGATGAGCTCAGGATAAAAAGAAATAACGAATTTGTCGCATATTGCGTCGG
GGCATTATTGCTAGGAATGACAGCAGCTGGAGGAAGCTGGTTCTACTATGATCAAAAATTACAGGATCAAGAACAAGCCA
ACCAACTCATCATCAGTACCAATCAGAATCTGGATGTACAGCTAAAATCTCTGGAAGGTTTACAGGAACAGCGTAATGCG
ATTGTGGAACGCATGAAACTGATTCAAGGTTTACAAACCCAGCGTCCAATTGCCGTACATCTTATTGACGAGATTGTACG
TGTGACACCAAGTGATATGTATATCACCAAGTTTGACCGTGTCGGTGATAAGTTCACCATTGAAGGTAAAGCAGCAAGTC
CAAATACGGTTGCAGAATTATTGCGTAATCTCGAAGCTTCTACCTGGTACCGTAATGCTTTCATGAATGCATTCCTGGTG
GCGGAAGAGAGCAAAGACAAGGCGCCAAGCTCTGTTATTCCACGTGTTGAAGAATCTTATGGCACATTTACAGTGACAGT
GGATCTGGACCAGATTGCTCAACCGGTGCTTTCAGAACAACAGCCGCAAGCAGCTGCAGCAGCAGGAGGGGCGACATCAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

68.421

98.122

0.671
  pilN Acinetobacter baumannii D1279779

66.509

99.531

0.662

Multiple sequence alignment