Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AsACE_RS09370 Genome accession   NZ_CP015615
Coordinates   1953914..1954213 (-) Length   99 a.a.
NCBI ID   WP_076753818.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain ACE     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1950384..1961242 1953914..1954213 within 0


Gene organization within MGE regions


Location: 1950384..1961242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS09355 (AsACE_CH01863) - 1950384..1950611 (+) 228 WP_076753817.1 hypothetical protein -
  AsACE_RS16400 (AsACE_CH01864) - 1951019..1951321 (+) 303 WP_171261603.1 transposase family protein -
  AsACE_RS09365 (AsACE_CH01865) - 1951269..1951739 (+) 471 WP_004809604.1 IS5/IS1182 family transposase -
  AsACE_RS09370 (AsACE_CH01867) ssb 1953914..1954213 (-) 300 WP_076753818.1 single-stranded DNA-binding protein Machinery gene
  AsACE_RS09375 (AsACE_CH01868) - 1954262..1955050 (+) 789 WP_076753819.1 suppressor of fused domain protein -
  AsACE_RS09380 (AsACE_CH01869) - 1955291..1957417 (-) 2127 WP_076753820.1 DUF3987 domain-containing protein -
  AsACE_RS09385 (AsACE_CH01870) - 1957410..1957712 (-) 303 WP_076753821.1 hypothetical protein -
  AsACE_RS09390 - 1957705..1958013 (-) 309 WP_076753822.1 hypothetical protein -
  AsACE_RS09395 (AsACE_CH01871) - 1958010..1958213 (-) 204 WP_076753823.1 hypothetical protein -
  AsACE_RS09400 (AsACE_CH01872) - 1958210..1958449 (-) 240 WP_076753824.1 hypothetical protein -
  AsACE_RS09405 (AsACE_CH01873) - 1958446..1958664 (-) 219 WP_004814004.1 helix-turn-helix domain-containing protein -
  AsACE_RS09410 (AsACE_CH01874) - 1958667..1958882 (-) 216 WP_076753825.1 transcriptional regulator -
  AsACE_RS09415 (AsACE_CH01875) - 1958985..1959929 (-) 945 WP_076753826.1 hypothetical protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11251.73 Da        Isoelectric Point: 10.0023

>NTDB_id=181526 AsACE_RS09370 WP_076753818.1 1953914..1954213(-) (ssb) [Acinetobacter schindleri strain ACE]
MAVLGRDPETKQFPNGGSITTFSVATTEFWKDKTTGERKEATEWHRIATNNRLAEIASKYLKKGGKVYIEGSLRTRKYKD
KSGSEKEITEIRADELQLL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=181526 AsACE_RS09370 WP_076753818.1 1953914..1954213(-) (ssb) [Acinetobacter schindleri strain ACE]
ATGGCTGTATTAGGCCGTGACCCGGAAACAAAGCAATTTCCCAACGGTGGCAGCATTACTACATTCAGCGTTGCAACTAC
CGAGTTTTGGAAAGACAAGACCACAGGCGAGCGCAAAGAGGCCACAGAATGGCACAGAATCGCCACTAACAACCGATTGG
CCGAGATTGCAAGTAAGTACCTCAAGAAAGGCGGAAAGGTTTATATCGAAGGCTCATTGCGTACAAGGAAGTATAAGGAC
AAAAGCGGATCAGAAAAGGAAATAACCGAGATTCGAGCAGATGAACTGCAATTGCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.208

96.97

0.535
  ssb Neisseria gonorrhoeae MS11

52.083

96.97

0.505
  ssb Neisseria meningitidis MC58

52.083

96.97

0.505
  ssb Vibrio cholerae strain A1552

52.273

88.889

0.465

Multiple sequence alignment