Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BSA171_RS00660 Genome accession   NZ_CP015611
Coordinates   116943..117485 (+) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus safensis strain U17-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 111943..122485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS00635 (BSA171_00625) - 112947..113357 (-) 411 WP_041089382.1 hypothetical protein -
  BSA171_RS00640 (BSA171_00630) - 113373..114692 (-) 1320 WP_075612237.1 hydrolase -
  BSA171_RS00645 (BSA171_00635) - 114987..115193 (+) 207 WP_008347561.1 DUF951 domain-containing protein -
  BSA171_RS00650 (BSA171_00640) ychF 115410..116510 (+) 1101 WP_075612236.1 redox-regulated ATPase YchF -
  BSA171_RS00655 (BSA171_00645) rpsF 116619..116906 (+) 288 WP_024424058.1 30S ribosomal protein S6 -
  BSA171_RS00660 (BSA171_00650) ssbA 116943..117485 (+) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  BSA171_RS00665 (BSA171_00655) rpsR 117526..117765 (+) 240 WP_008359105.1 30S ribosomal protein S18 -
  BSA171_RS00670 (BSA171_00660) - 117865..118314 (-) 450 WP_041089389.1 hypothetical protein -
  BSA171_RS00675 (BSA171_00665) - 118535..119500 (+) 966 WP_075612235.1 ABC transporter ATP-binding protein -
  BSA171_RS00680 (BSA171_00670) opuFB 119493..121010 (+) 1518 WP_075612234.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  BSA171_RS00685 (BSA171_00675) - 121203..122174 (+) 972 WP_075612233.1 ring-cleaving dioxygenase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=181421 BSA171_RS00660 WP_007497456.1 116943..117485(+) (ssbA) [Bacillus safensis strain U17-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=181421 BSA171_RS00660 WP_007497456.1 116943..117485(+) (ssbA) [Bacillus safensis strain U17-1]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGGAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361

Multiple sequence alignment