Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BSA41_RS17410 Genome accession   NZ_CP015610
Coordinates   3340157..3340699 (-) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus safensis strain U41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3335157..3345699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA41_RS17385 (BSA41_17035) - 3335468..3336439 (-) 972 WP_075612233.1 ring-cleaving dioxygenase -
  BSA41_RS17390 (BSA41_17040) opuFB 3336632..3338149 (-) 1518 WP_075612234.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  BSA41_RS17395 (BSA41_17045) - 3338142..3339107 (-) 966 WP_075612235.1 ABC transporter ATP-binding protein -
  BSA41_RS17400 (BSA41_17050) - 3339328..3339777 (+) 450 WP_041089389.1 hypothetical protein -
  BSA41_RS17405 (BSA41_17055) rpsR 3339877..3340116 (-) 240 WP_008359105.1 30S ribosomal protein S18 -
  BSA41_RS17410 (BSA41_17060) ssbA 3340157..3340699 (-) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  BSA41_RS17415 (BSA41_17065) rpsF 3340736..3341023 (-) 288 WP_024424058.1 30S ribosomal protein S6 -
  BSA41_RS17420 (BSA41_17070) ychF 3341132..3342232 (-) 1101 WP_075612236.1 redox-regulated ATPase YchF -
  BSA41_RS17425 (BSA41_17075) - 3342449..3342655 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  BSA41_RS17430 (BSA41_17080) - 3342950..3344269 (+) 1320 WP_075612237.1 hydrolase -
  BSA41_RS17435 (BSA41_17085) - 3344285..3344695 (+) 411 WP_041089382.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=181411 BSA41_RS17410 WP_007497456.1 3340157..3340699(-) (ssbA) [Bacillus safensis strain U41]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=181411 BSA41_RS17410 WP_007497456.1 3340157..3340699(-) (ssbA) [Bacillus safensis strain U41]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGGAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361

Multiple sequence alignment