Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   BZJ79_RS08270 Genome accession   NZ_CP019592
Coordinates   1672320..1672922 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain GD5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1667320..1677922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZJ79_RS08250 (BZJ79_08260) yajC 1668816..1669076 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  BZJ79_RS08255 (BZJ79_08265) tgt 1669095..1670234 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  BZJ79_RS08260 (BZJ79_08270) queA 1670257..1671282 (-) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  BZJ79_RS08265 (BZJ79_08275) ruvB 1671284..1672288 (-) 1005 WP_001005766.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BZJ79_RS08270 (BZJ79_08280) ruvA 1672320..1672922 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  BZJ79_RS08275 (BZJ79_08285) - 1672936..1673391 (-) 456 WP_000368902.1 ACT domain-containing protein -
  BZJ79_RS08280 (BZJ79_08290) obgE 1673404..1674689 (-) 1286 Protein_1555 GTPase ObgE -
  BZJ79_RS08285 (BZJ79_08295) rpmA 1675167..1675450 (-) 284 Protein_1556 50S ribosomal protein L27 -
  BZJ79_RS08290 (BZJ79_08300) - 1675462..1675781 (-) 320 Protein_1557 ribosomal-processing cysteine protease Prp -
  BZJ79_RS08295 (BZJ79_08305) rplU 1675786..1676130 (-) 345 WP_084578702.1 50S ribosomal protein L21 -
  BZJ79_RS08300 (BZJ79_08310) cymR 1676582..1677004 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=181328 BZJ79_RS08270 WP_000271547.1 1672320..1672922(-) (ruvA) [Staphylococcus aureus strain GD5]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=181328 BZJ79_RS08270 WP_000271547.1 1672320..1672922(-) (ruvA) [Staphylococcus aureus strain GD5]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAGCGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425