Detailed information
Bioinformatically predicted
Overview
| Name | comFA | Type | Machinery gene |
| Locus tag | BSA145_RS03910 | Genome accession | NZ_CP015607 |
| Coordinates | 734846..735835 (+) | Length | 329 a.a. |
| NCBI ID | WP_418202168.1 | Uniprot ID | - |
| Organism | Bacillus safensis strain U14-5 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 699213..735835 | 734846..735835 | within | 0 |
Gene organization within MGE regions
Location: 699213..735835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSA145_RS22540 | - | 699213..699632 (-) | 420 | WP_231120693.1 | hypothetical protein | - |
| BSA145_RS03660 (BSA145_03610) | - | 699629..700570 (-) | 942 | WP_231120694.1 | recombinase family protein | - |
| BSA145_RS03665 (BSA145_03615) | - | 700583..701230 (-) | 648 | WP_075621644.1 | LexA family protein | - |
| BSA145_RS03670 (BSA145_03620) | - | 701427..701681 (+) | 255 | WP_075621645.1 | helix-turn-helix transcriptional regulator | - |
| BSA145_RS03675 (BSA145_03625) | - | 701703..701951 (+) | 249 | WP_075621646.1 | hypothetical protein | - |
| BSA145_RS22235 | - | 702252..702413 (+) | 162 | WP_186303771.1 | hypothetical protein | - |
| BSA145_RS03690 (BSA145_03630) | - | 702766..703416 (+) | 651 | WP_075621648.1 | Rha family transcriptional regulator | - |
| BSA145_RS03695 (BSA145_03635) | - | 703746..704090 (+) | 345 | WP_075621649.1 | hypothetical protein | - |
| BSA145_RS03700 (BSA145_03640) | - | 704232..704747 (-) | 516 | WP_075621650.1 | hypothetical protein | - |
| BSA145_RS03705 (BSA145_03645) | - | 704881..705639 (+) | 759 | WP_075621651.1 | hypothetical protein | - |
| BSA145_RS03710 (BSA145_03650) | - | 705843..706244 (+) | 402 | WP_075621652.1 | hypothetical protein | - |
| BSA145_RS23150 | - | 706393..706674 (+) | 282 | WP_335617734.1 | hypothetical protein | - |
| BSA145_RS23155 | - | 706742..707035 (+) | 294 | WP_335617735.1 | hypothetical protein | - |
| BSA145_RS03720 (BSA145_03660) | - | 707028..707387 (+) | 360 | WP_075621653.1 | replicative helicase loader/inhibitor | - |
| BSA145_RS03725 (BSA145_03665) | dnaB | 707384..708712 (+) | 1329 | WP_075621654.1 | replicative DNA helicase | - |
| BSA145_RS03730 (BSA145_03670) | - | 708709..708924 (+) | 216 | WP_075621655.1 | hypothetical protein | - |
| BSA145_RS03735 (BSA145_03675) | - | 709026..709226 (+) | 201 | WP_196774866.1 | XtrA/YqaO family protein | - |
| BSA145_RS03740 (BSA145_03680) | - | 709322..709513 (+) | 192 | WP_075621656.1 | hypothetical protein | - |
| BSA145_RS03745 (BSA145_03685) | - | 709531..709965 (+) | 435 | WP_075621657.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| BSA145_RS03750 (BSA145_03690) | - | 710101..710301 (+) | 201 | WP_142394365.1 | hypothetical protein | - |
| BSA145_RS03755 (BSA145_03695) | - | 710416..710760 (+) | 345 | WP_075621659.1 | structural protein | - |
| BSA145_RS03760 (BSA145_03700) | - | 710890..711075 (+) | 186 | WP_075621660.1 | hypothetical protein | - |
| BSA145_RS03765 (BSA145_03705) | - | 711081..711368 (+) | 288 | WP_075621661.1 | hypothetical protein | - |
| BSA145_RS23240 | - | 711619..711804 (+) | 186 | WP_418202167.1 | hypothetical protein | - |
| BSA145_RS03775 (BSA145_03710) | - | 711815..712225 (+) | 411 | WP_075621662.1 | P27 family phage terminase small subunit | - |
| BSA145_RS03780 (BSA145_03715) | - | 712225..713979 (+) | 1755 | WP_081385831.1 | terminase large subunit | - |
| BSA145_RS03785 (BSA145_03720) | - | 713991..715169 (+) | 1179 | WP_075621664.1 | phage portal protein | - |
| BSA145_RS03790 (BSA145_03725) | - | 715162..715749 (+) | 588 | WP_155762149.1 | HK97 family phage prohead protease | - |
| BSA145_RS03795 (BSA145_03730) | - | 715749..717026 (+) | 1278 | WP_075621666.1 | phage major capsid protein | - |
| BSA145_RS03800 (BSA145_03735) | - | 717004..717270 (+) | 267 | WP_075621667.1 | head-tail connector protein | - |
| BSA145_RS03805 (BSA145_03740) | - | 717260..717622 (+) | 363 | WP_075621668.1 | phage head closure protein | - |
| BSA145_RS23040 | - | 717591..717716 (+) | 126 | WP_257787573.1 | hypothetical protein | - |
| BSA145_RS03810 (BSA145_03745) | - | 717717..718001 (+) | 285 | WP_075621669.1 | hypothetical protein | - |
| BSA145_RS03815 (BSA145_03750) | gp17 | 718004..718387 (+) | 384 | WP_075621670.1 | tail completion protein gp17 | - |
| BSA145_RS03820 (BSA145_03755) | - | 718384..719007 (+) | 624 | WP_075621671.1 | major tail protein | - |
| BSA145_RS03825 (BSA145_03760) | gpG | 719007..719378 (+) | 372 | WP_075621672.1 | phage tail assembly chaperone G | - |
| BSA145_RS03830 (BSA145_03765) | - | 719587..723810 (+) | 4224 | WP_075621673.1 | phage tail tape measure protein | - |
| BSA145_RS22545 | - | 723810..723974 (+) | 165 | WP_231120797.1 | hypothetical protein | - |
| BSA145_RS03835 (BSA145_03770) | - | 723982..724611 (+) | 630 | WP_231120762.1 | phage tail domain-containing protein | - |
| BSA145_RS03840 (BSA145_03775) | - | 724614..726494 (+) | 1881 | WP_075621674.1 | phage tail spike protein | - |
| BSA145_RS03845 (BSA145_03780) | - | 726507..726728 (+) | 222 | WP_075621675.1 | hypothetical protein | - |
| BSA145_RS03850 (BSA145_03785) | - | 726764..728371 (+) | 1608 | WP_075621676.1 | right-handed parallel beta-helix repeat-containing protein | - |
| BSA145_RS03855 (BSA145_03790) | - | 728383..729987 (+) | 1605 | WP_075621677.1 | BppU family phage baseplate upper protein | - |
| BSA145_RS03860 (BSA145_03795) | - | 730090..730290 (+) | 201 | WP_231120695.1 | hypothetical protein | - |
| BSA145_RS03865 | - | 730287..730427 (+) | 141 | WP_075621679.1 | XkdX family protein | - |
| BSA145_RS03870 (BSA145_03800) | - | 730467..730682 (+) | 216 | WP_075623626.1 | BhlA/UviB family holin-like peptide | - |
| BSA145_RS03875 (BSA145_03805) | - | 730700..730963 (+) | 264 | WP_075621680.1 | phage holin | - |
| BSA145_RS03880 (BSA145_03810) | - | 731024..731845 (+) | 822 | WP_075621681.1 | N-acetylmuramoyl-L-alanine amidase | - |
| BSA145_RS03885 (BSA145_03815) | - | 731930..732442 (-) | 513 | WP_075621682.1 | hypothetical protein | - |
| BSA145_RS03895 (BSA145_03825) | - | 732853..733998 (+) | 1146 | Protein_754 | Rap family tetratricopeptide repeat protein | - |
| BSA145_RS22000 | - | 733988..734125 (+) | 138 | WP_155762150.1 | hypothetical protein | - |
| BSA145_RS22245 | - | 734173..734328 (-) | 156 | WP_196774868.1 | Arm DNA-binding domain-containing protein | - |
| BSA145_RS03905 (BSA145_03830) | - | 734396..734584 (-) | 189 | WP_075621684.1 | hypothetical protein | - |
| BSA145_RS03910 (BSA145_03835) | comFA | 734846..735835 (+) | 990 | WP_418202168.1 | helicase-related protein | Machinery gene |
Sequence
Protein
Download Length: 329 a.a. Molecular weight: 37524.87 Da Isoelectric Point: 10.4275
>NTDB_id=181311 BSA145_RS03910 WP_418202168.1 734846..735835(+) (comFA) [Bacillus safensis strain U14-5]
MYSFPVVCGAGKTEVLFHGIEYALNQGMSVCIATPRTDVVLELEPRLRKAFQGVTITVLYGGSSQRFQITPLVITTTHQL
MRYKNAFDVLIVDEVDAFPYSMDERLQFAVLKAMRNNRGVRIYLSATPSKKMTREVSRGELKAIKIPLRFHEQLLPVPTF
HWIGHWKKKLKKNQLPPKVMNWMQRHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYD
VLVTTTILERGVTIPNVQVGVLGSESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKE
FSEKQCGFN
MYSFPVVCGAGKTEVLFHGIEYALNQGMSVCIATPRTDVVLELEPRLRKAFQGVTITVLYGGSSQRFQITPLVITTTHQL
MRYKNAFDVLIVDEVDAFPYSMDERLQFAVLKAMRNNRGVRIYLSATPSKKMTREVSRGELKAIKIPLRFHEQLLPVPTF
HWIGHWKKKLKKNQLPPKVMNWMQRHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYD
VLVTTTILERGVTIPNVQVGVLGSESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKE
FSEKQCGFN
Nucleotide
Download Length: 990 bp
>NTDB_id=181311 BSA145_RS03910 WP_418202168.1 734846..735835(+) (comFA) [Bacillus safensis strain U14-5]
ATGTATTCATTCCCTGTCGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCATGGAATCGAATATGCGTTAAATCAAGG
AATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATTTCAAGGGG
TGACAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCCACCAGCTG
ATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAGCGTCTCCA
ATTTGCTGTGCTAAAGGCGATGAGAAATAACAGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAAAATGACGA
GAGAGGTTTCTCGTGGAGAACTGAAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCAACTATTACCCGTACCGACCTTT
CATTGGATAGGACATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAGAGACATAT
TGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTTCGAGAACAAT
CCTTAAACGTGGAGGGAGTATCTGCCGACGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACGTATACGAT
GTACTAGTTACAACCACTATTTTAGAAAGAGGCGTAACGATTCCAAATGTTCAAGTGGGGGTACTAGGTTCGGAATCTAC
TATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGGCGGGTAGGCAGACACCCGGATTATTGTACAGGAGATGTTTTCC
TTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTGCAAAAGAG
TTTTCTGAAAAACAGTGTGGGTTCAACTAA
ATGTATTCATTCCCTGTCGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCATGGAATCGAATATGCGTTAAATCAAGG
AATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATTTCAAGGGG
TGACAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCCACCAGCTG
ATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAGCGTCTCCA
ATTTGCTGTGCTAAAGGCGATGAGAAATAACAGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAAAATGACGA
GAGAGGTTTCTCGTGGAGAACTGAAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCAACTATTACCCGTACCGACCTTT
CATTGGATAGGACATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAGAGACATAT
TGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTTCGAGAACAAT
CCTTAAACGTGGAGGGAGTATCTGCCGACGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACGTATACGAT
GTACTAGTTACAACCACTATTTTAGAAAGAGGCGTAACGATTCCAAATGTTCAAGTGGGGGTACTAGGTTCGGAATCTAC
TATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGGCGGGTAGGCAGACACCCGGATTATTGTACAGGAGATGTTTTCC
TTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTGCAAAAGAG
TTTTCTGAAAAACAGTGTGGGTTCAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA | Bacillus subtilis subsp. subtilis str. 168 |
58.28 |
95.441 |
0.556 |
| comFA/cflA | Streptococcus pneumoniae TIGR4 |
43.175 |
95.745 |
0.413 |
| comFA/cflA | Streptococcus pneumoniae Rx1 |
43.175 |
95.745 |
0.413 |
| comFA/cflA | Streptococcus pneumoniae D39 |
43.175 |
95.745 |
0.413 |
| comFA/cflA | Streptococcus pneumoniae R6 |
43.175 |
95.745 |
0.413 |
| comFA/cflA | Streptococcus mitis NCTC 12261 |
42.857 |
95.745 |
0.41 |
| comFA/cflA | Streptococcus mitis SK321 |
42.54 |
95.745 |
0.407 |
| comFA | Latilactobacillus sakei subsp. sakei 23K |
42.444 |
94.529 |
0.401 |
| comFA | Lactococcus lactis subsp. cremoris KW2 |
39.809 |
95.441 |
0.38 |