Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A7J50_RS26085 | Genome accession | NZ_CP015600 |
| Coordinates | 5745599..5746126 (-) | Length | 175 a.a. |
| NCBI ID | WP_049711300.1 | Uniprot ID | - |
| Organism | Pseudomonas antarctica strain PAMC 27494 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5740599..5751126
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7J50_RS26060 (A7J50_5215) | - | 5741083..5741838 (-) | 756 | WP_064454347.1 | alpha/beta hydrolase family protein | - |
| A7J50_RS26065 (A7J50_5216) | - | 5741828..5742937 (-) | 1110 | WP_064454348.1 | DUF3182 family protein | - |
| A7J50_RS26070 (A7J50_5217) | - | 5743176..5743739 (+) | 564 | WP_064454349.1 | cysteine hydrolase family protein | - |
| A7J50_RS26075 (A7J50_5218) | tam | 5743761..5744522 (-) | 762 | WP_064454350.1 | trans-aconitate 2-methyltransferase | - |
| A7J50_RS26080 (A7J50_5219) | - | 5744624..5745532 (+) | 909 | WP_064454351.1 | LysR family transcriptional regulator | - |
| A7J50_RS26085 (A7J50_5220) | ssb | 5745599..5746126 (-) | 528 | WP_049711300.1 | single-stranded DNA-binding protein | Machinery gene |
| A7J50_RS26090 (A7J50_5221) | - | 5746136..5747530 (-) | 1395 | WP_064454352.1 | MFS transporter | - |
| A7J50_RS26095 (A7J50_5222) | uvrA | 5747709..5750543 (+) | 2835 | WP_064454353.1 | excinuclease ABC subunit UvrA | - |
| A7J50_RS26100 (A7J50_5223) | bfr | 5750609..5751073 (-) | 465 | WP_015886133.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19410.58 Da Isoelectric Point: 5.9366
>NTDB_id=181290 A7J50_RS26085 WP_049711300.1 5745599..5746126(-) (ssb) [Pseudomonas antarctica strain PAMC 27494]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGEQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGEQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=181290 A7J50_RS26085 WP_049711300.1 5745599..5746126(-) (ssb) [Pseudomonas antarctica strain PAMC 27494]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGAGCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAATCGCGTCAGGCGCCGCCTCCACAACAGGCCGCTCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTGGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGAGCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAATCGCGTCAGGCGCCGCCTCCACAACAGGCCGCTCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.065 |
100 |
0.6 |
| ssb | Glaesserella parasuis strain SC1401 |
46.354 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
49.444 |
100 |
0.509 |
| ssb | Neisseria gonorrhoeae MS11 |
49.444 |
100 |
0.509 |