Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   A3K93_RS11845 Genome accession   NZ_CP015594
Coordinates   2458556..2459695 (+) Length   379 a.a.
NCBI ID   WP_067731392.1    Uniprot ID   -
Organism   Acinetobacter sp. NCu2D-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2453556..2464695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS11825 (A3K93_11825) - 2453975..2456071 (-) 2097 WP_067731389.1 TonB-dependent copper receptor -
  A3K93_RS11830 (A3K93_11830) - 2456141..2456560 (-) 420 WP_067731744.1 DUF2946 family protein -
  A3K93_RS11835 (A3K93_11835) def 2456656..2457186 (-) 531 WP_067731390.1 peptide deformylase -
  A3K93_RS11840 (A3K93_11840) tsaP 2457307..2458461 (+) 1155 WP_067731391.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  A3K93_RS11845 (A3K93_11845) dprA 2458556..2459695 (+) 1140 WP_067731392.1 DNA-processing protein DprA Machinery gene
  A3K93_RS11850 (A3K93_11850) - 2459738..2460307 (+) 570 WP_067731393.1 Sua5/YciO/YrdC/YwlC family protein -
  A3K93_RS11855 (A3K93_11855) - 2460724..2461632 (-) 909 WP_067731394.1 DMT family transporter -
  A3K93_RS11860 (A3K93_11860) - 2461819..2462364 (+) 546 WP_067731395.1 glutathione peroxidase -
  A3K93_RS11865 (A3K93_11865) - 2462538..2463566 (+) 1029 WP_081408506.1 transposase -
  A3K93_RS11870 (A3K93_11870) - 2463721..2464086 (+) 366 WP_067731396.1 RcnB family protein -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42673.37 Da        Isoelectric Point: 6.8471

>NTDB_id=181266 A3K93_RS11845 WP_067731392.1 2458556..2459695(+) (dprA) [Acinetobacter sp. NCu2D-2]
MLNTLSSEQLDTLTLWFLVQHSISSFNKIRHHYPYLAQAILPSQVETWRSLGIHANHLKRLQDFHQIDVQKQFQRCIERV
KQFSDFILIDTDANYPQQLQPYADKPPILFGQGNADALLQAQIAIVGSRKPSHHGRQVAYDFAFYLSEQGFYINSGLAQG
IDEAAHRAALQHKRTIAVMGTGLDQTYPSQHQTLRHNIIENGGTVITEFLPDTPPLQHHFPRRNRIVSGLSLGVIVAEAT
LKSGSLLTAQWAAEQGKTIFAIPGHIYSEQHQGCHQLIRDGATLIDHPQQVIEDLALATQWQSLQNSLPKEAPSSEPTRI
PEHLIALYNQLDWVGQDLDSLSIQLKQDVSILTSHLMELELLGLSTQQSGMFVRCRNSK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=181266 A3K93_RS11845 WP_067731392.1 2458556..2459695(+) (dprA) [Acinetobacter sp. NCu2D-2]
ATGCTAAATACCTTGTCGTCCGAACAATTAGATACGCTAACCCTATGGTTTTTAGTACAACACTCGATTTCAAGTTTTAA
TAAAATCCGTCATCACTATCCCTATCTTGCTCAAGCAATACTACCGAGTCAGGTCGAAACATGGCGAAGCTTAGGTATTC
ACGCCAATCACCTAAAAAGACTACAAGACTTTCATCAAATTGATGTGCAGAAGCAGTTTCAGCGCTGTATTGAACGCGTT
AAACAATTTTCAGATTTTATCTTGATCGATACTGATGCCAATTATCCGCAACAACTACAACCCTATGCCGATAAACCACC
GATTTTATTTGGTCAAGGTAATGCAGATGCTCTCCTACAAGCCCAAATTGCAATTGTTGGTAGCCGTAAACCGAGTCATC
ATGGTCGACAAGTGGCTTATGACTTTGCGTTTTACTTGAGTGAACAAGGTTTCTATATCAATAGCGGACTCGCGCAAGGC
ATTGATGAAGCTGCGCATCGAGCTGCACTGCAACATAAACGCACGATTGCCGTAATGGGAACAGGACTGGATCAAACCTA
TCCATCTCAACATCAAACGTTAAGACACAACATTATTGAAAACGGCGGTACGGTGATTACTGAGTTTTTGCCCGATACTC
CCCCATTACAACATCACTTTCCAAGACGAAATCGTATTGTCAGTGGTTTAAGTCTAGGCGTCATTGTGGCAGAAGCAACA
CTTAAAAGTGGTTCCTTACTCACAGCGCAATGGGCAGCTGAACAAGGCAAAACTATTTTTGCCATTCCGGGACATATTTA
TAGTGAGCAACATCAAGGGTGTCATCAATTGATCCGTGACGGCGCGACATTGATTGATCACCCGCAGCAAGTCATTGAAG
ACCTCGCACTTGCTACGCAATGGCAATCTTTACAAAATTCTCTACCTAAAGAAGCGCCTTCTAGTGAACCAACGCGTATC
CCTGAACACCTGATTGCACTTTACAATCAGTTAGATTGGGTCGGGCAAGACCTTGATTCTTTAAGCATTCAACTAAAACA
GGATGTCTCCATTCTGACTAGCCACTTGATGGAATTAGAATTACTGGGTTTAAGTACACAACAATCTGGCATGTTTGTGC
GTTGTCGTAATAGTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

64.191

99.472

0.639

  dprA Acinetobacter baumannii D1279779

63.926

99.472

0.636

  dprA Acinetobacter baylyi ADP1

56.806

100

0.573


Multiple sequence alignment