Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   A3K93_RS11840 Genome accession   NZ_CP015594
Coordinates   2457307..2458461 (+) Length   384 a.a.
NCBI ID   WP_067731391.1    Uniprot ID   -
Organism   Acinetobacter sp. NCu2D-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2452307..2463461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS11825 (A3K93_11825) - 2453975..2456071 (-) 2097 WP_067731389.1 TonB-dependent copper receptor -
  A3K93_RS11830 (A3K93_11830) - 2456141..2456560 (-) 420 WP_067731744.1 DUF2946 family protein -
  A3K93_RS11835 (A3K93_11835) def 2456656..2457186 (-) 531 WP_067731390.1 peptide deformylase -
  A3K93_RS11840 (A3K93_11840) tsaP 2457307..2458461 (+) 1155 WP_067731391.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  A3K93_RS11845 (A3K93_11845) dprA 2458556..2459695 (+) 1140 WP_067731392.1 DNA-processing protein DprA Machinery gene
  A3K93_RS11850 (A3K93_11850) - 2459738..2460307 (+) 570 WP_067731393.1 Sua5/YciO/YrdC/YwlC family protein -
  A3K93_RS11855 (A3K93_11855) - 2460724..2461632 (-) 909 WP_067731394.1 DMT family transporter -
  A3K93_RS11860 (A3K93_11860) - 2461819..2462364 (+) 546 WP_067731395.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41767.83 Da        Isoelectric Point: 8.3950

>NTDB_id=181265 A3K93_RS11840 WP_067731391.1 2457307..2458461(+) (tsaP) [Acinetobacter sp. NCu2D-2]
MKKVLTGAPTFSALGLKKQMLALAVTVGVSLGTVSIAEAAPARNVNPPSLKANAPQVYVVKKGDTLWDISKRFLKNPVRW
REIWASNRHVKNPHWIFPGDRLLMCTYNGKPIIGKDEGDGCAGIIRRYAGGTNVKPQVRVEELSNTIPVIPLEHIKHWLT
RSTILPADTLDGVPYIVGAADHRVLAAKGQTVYARGNGLEIGKRYAVYHEGEPYIFTDANGVKYNAGLELTQVASGIAVR
GEGDITTLELTNSFDREVRRGDRILPEYDAMLPTLFYPTSAENITAGGIVVRVQGSIGTAAKHSVVTIDRGASHGVEVGD
VFEVNQAGEWTVDPKTNERIQLPGEEIGSIMVFKTFNNLSYAYVLESALPMKVGAQIQVPSLED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=181265 A3K93_RS11840 WP_067731391.1 2457307..2458461(+) (tsaP) [Acinetobacter sp. NCu2D-2]
ATGAAAAAAGTTTTGACGGGCGCGCCAACTTTTAGTGCCTTGGGGTTAAAAAAACAAATGCTTGCGCTCGCCGTTACCGT
CGGGGTAAGCCTAGGAACCGTGTCTATTGCTGAGGCAGCACCAGCACGTAATGTCAATCCTCCTTCACTAAAAGCCAATG
CACCGCAAGTGTATGTAGTGAAAAAAGGCGACACACTTTGGGATATCTCTAAACGTTTTCTAAAGAACCCTGTACGTTGG
CGTGAAATTTGGGCGAGCAACCGACACGTTAAAAATCCACACTGGATTTTCCCAGGTGACCGCTTACTGATGTGTACCTA
TAACGGCAAACCGATTATTGGCAAGGACGAAGGTGATGGCTGTGCCGGAATTATCCGTCGATATGCTGGCGGTACCAATG
TCAAACCACAAGTTCGCGTCGAGGAATTAAGTAATACTATTCCGGTTATTCCACTTGAACACATTAAACACTGGTTGACT
CGCAGTACGATTTTACCTGCAGACACATTGGACGGCGTGCCATATATCGTTGGTGCAGCAGATCATCGTGTGCTTGCCGC
AAAAGGTCAAACCGTTTATGCCCGTGGAAATGGTTTAGAAATTGGTAAACGCTATGCGGTTTATCATGAAGGCGAACCGT
ATATTTTCACAGATGCAAATGGCGTTAAATACAATGCAGGTCTTGAACTGACTCAAGTAGCTTCAGGTATTGCTGTACGT
GGTGAAGGTGATATAACTACACTTGAACTGACTAACAGTTTTGACCGTGAAGTGCGCCGCGGTGATCGTATCTTGCCTGA
ATACGATGCCATGCTACCTACCCTGTTCTACCCTACAAGTGCAGAGAACATTACTGCTGGCGGTATTGTCGTGCGTGTAC
AAGGTTCTATTGGTACAGCTGCAAAACACAGTGTGGTGACCATTGACCGTGGTGCTTCACATGGTGTCGAAGTAGGTGAT
GTTTTTGAAGTCAATCAAGCAGGTGAATGGACCGTTGATCCAAAAACCAATGAGCGCATTCAATTACCGGGTGAAGAAAT
CGGTAGCATCATGGTATTTAAGACCTTTAACAACCTAAGTTATGCCTACGTGCTTGAAAGTGCATTACCAATGAAAGTCG
GTGCACAAATCCAAGTACCATCTTTAGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.195

100

0.654

Multiple sequence alignment