Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   A3K93_RS11195 Genome accession   NZ_CP015594
Coordinates   2320876..2321586 (-) Length   236 a.a.
NCBI ID   WP_067731291.1    Uniprot ID   A0A172YS70
Organism   Acinetobacter sp. NCu2D-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2315876..2326586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS11175 (A3K93_11175) aroB 2316547..2317626 (-) 1080 WP_067731287.1 3-dehydroquinate synthase -
  A3K93_RS11180 (A3K93_11180) aroK 2317653..2318189 (-) 537 WP_067731288.1 shikimate kinase AroK -
  A3K93_RS11185 (A3K93_11185) pilQ 2318226..2320331 (-) 2106 WP_067731289.1 type IV pilus secretin PilQ Machinery gene
  A3K93_RS11190 (A3K93_11190) pilP 2320349..2320876 (-) 528 WP_067731290.1 pilus assembly protein PilP Machinery gene
  A3K93_RS11195 (A3K93_11195) comO 2320876..2321586 (-) 711 WP_067731291.1 type 4a pilus biogenesis protein PilO Machinery gene
  A3K93_RS11200 (A3K93_11200) comN 2321583..2322227 (-) 645 WP_067731292.1 PilN domain-containing protein Machinery gene
  A3K93_RS11205 (A3K93_11205) pilM 2322227..2323285 (-) 1059 WP_067731293.1 pilus assembly protein PilM Machinery gene
  A3K93_RS11210 (A3K93_11210) ponA 2323452..2325980 (+) 2529 WP_067731294.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26811.39 Da        Isoelectric Point: 4.9676

>NTDB_id=181255 A3K93_RS11195 WP_067731291.1 2320876..2321586(-) (comO) [Acinetobacter sp. NCu2D-2]
MSQQINELNDDAVVAPKNKMTVEKFFQQFNTLDPNNYGSWPLAVKITCWLFIIFLVLALVYFGFIKGKIEAIEQANAQEQ
NLLNEFREKDSKLRNLQQYQIQLQEMKASFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEVQQEFFIEQPI
SIEATGDYHAFGTFVSSIAALSRIVTLHDFTITGTENKEKRSEIPTIDYSLKAKTYRYVGNASVKQNSNTSAGGTQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=181255 A3K93_RS11195 WP_067731291.1 2320876..2321586(-) (comO) [Acinetobacter sp. NCu2D-2]
ATGAGTCAGCAAATCAATGAATTAAATGACGATGCAGTTGTAGCACCAAAAAATAAAATGACTGTAGAGAAGTTTTTCCA
GCAGTTTAATACCTTAGATCCAAATAATTATGGCTCTTGGCCACTTGCAGTCAAAATTACGTGTTGGCTGTTTATCATTT
TCCTTGTTTTGGCATTAGTCTATTTTGGTTTTATCAAAGGTAAAATTGAGGCAATTGAGCAAGCCAATGCACAAGAACAA
AACTTATTAAATGAATTTCGTGAAAAAGATTCTAAGTTGCGTAACTTGCAGCAATATCAAATTCAATTGCAGGAAATGAA
AGCAAGTTTTAATCAGCAATTAGAACAATTGCCGAAAGAAACAGAAATTCCTGGCTTGGTTGAAGACATTAACTTAAGTG
GTGTGAATTCAGGCCTCAAATTTAAAAATATTCGCTTAGAACCTGAAGTGCAACAAGAATTCTTTATCGAACAGCCGATT
TCGATTGAAGCCACAGGCGATTATCATGCATTTGGTACGTTTGTGAGCAGTATTGCGGCTTTATCACGTATTGTGACATT
ACATGATTTCACGATTACGGGTACAGAAAATAAAGAAAAAAGAAGTGAGATTCCAACCATTGATTATTCTTTAAAAGCGA
AGACTTATCGTTATGTTGGAAATGCATCAGTAAAGCAAAATAGTAATACCTCAGCTGGAGGTACTCAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172YS70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

71.491

96.61

0.691
  pilO Acinetobacter baumannii D1279779

68.22

100

0.682

Multiple sequence alignment