Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   A3K93_RS11185 Genome accession   NZ_CP015594
Coordinates   2318226..2320331 (-) Length   701 a.a.
NCBI ID   WP_067731289.1    Uniprot ID   A0A172YR61
Organism   Acinetobacter sp. NCu2D-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2313226..2325331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3K93_RS11170 (A3K93_11170) - 2315683..2316534 (-) 852 WP_067731286.1 hypothetical protein -
  A3K93_RS11175 (A3K93_11175) aroB 2316547..2317626 (-) 1080 WP_067731287.1 3-dehydroquinate synthase -
  A3K93_RS11180 (A3K93_11180) aroK 2317653..2318189 (-) 537 WP_067731288.1 shikimate kinase AroK -
  A3K93_RS11185 (A3K93_11185) pilQ 2318226..2320331 (-) 2106 WP_067731289.1 type IV pilus secretin PilQ Machinery gene
  A3K93_RS11190 (A3K93_11190) pilP 2320349..2320876 (-) 528 WP_067731290.1 pilus assembly protein PilP Machinery gene
  A3K93_RS11195 (A3K93_11195) comO 2320876..2321586 (-) 711 WP_067731291.1 type 4a pilus biogenesis protein PilO Machinery gene
  A3K93_RS11200 (A3K93_11200) comN 2321583..2322227 (-) 645 WP_067731292.1 PilN domain-containing protein Machinery gene
  A3K93_RS11205 (A3K93_11205) pilM 2322227..2323285 (-) 1059 WP_067731293.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76404.52 Da        Isoelectric Point: 5.3822

>NTDB_id=181253 A3K93_RS11185 WP_067731289.1 2318226..2320331(-) (pilQ) [Acinetobacter sp. NCu2D-2]
MKNSFRDYIFGDGNTMNHVFRQFSMASIAIAISQVASAQVEITNIVPMQIPGQGTEIRVMFNGLPPQPNAYQLETPSRLI
LDFENTRENFAQKNIAIGTKEASQLGVSSDAERSRLTVNLTDPGAFTTRVEGNTFILKINAAAPAVAKNVSPRYVEQGIT
NIGFQRGSKGEGQIVIDLAGANTPVDVQQQGTKVVIRSLGSKIPAHLIRRLNVNDFATPASTVDAVNQNGSGLITIQTNG
SYEYMAYQTDNKLTISLKRPEDKNPLRPKAVSHYSGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKKLDKRRNGNVIWIAPIEELTKAEEEEAKAIAQSIKLSPLQTEYIQLSYAKAADIEKLLTSSKKASNS
SSSTGGSSGDDPLGEANLLSPRGTVSVDTRTNTLIINDTSQRIDQIRKMIDLLDVAVKQVMVEARIVTAERSFSRDLGIK
WGLQRNNPTGLNAPGSTVWGGDFSPKVDLGVDLSTASAGTFNFGLLKISDYMLDLQLTALQSDGMGEVLSAPKILTGDKQ
KAYILRGTEIPYQTYSANEGSTTSFKEANLKLEVTPSITPEGKVQLELKVEKDSIGEMTTEGPSINTNELETNVLINDGE
TVVLGGIFDDFKTTTSDKVPFFGDLPVVGNLFKNNSKVSNQAELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=181253 A3K93_RS11185 WP_067731289.1 2318226..2320331(-) (pilQ) [Acinetobacter sp. NCu2D-2]
ATGAAAAATAGTTTTAGAGATTATATTTTTGGGGATGGTAATACAATGAATCATGTGTTTCGTCAGTTTTCTATGGCTTC
GATTGCCATTGCGATCTCACAGGTAGCGAGCGCTCAAGTTGAGATCACCAATATTGTACCGATGCAGATTCCAGGGCAAG
GCACTGAGATTCGTGTCATGTTTAATGGTTTACCACCACAGCCAAATGCCTATCAATTAGAAACACCATCACGTTTAATT
TTAGATTTTGAAAATACGCGAGAAAATTTTGCGCAAAAGAATATTGCGATTGGGACTAAAGAAGCATCGCAGTTAGGTGT
TAGTTCTGATGCTGAACGTTCACGTTTAACCGTGAATTTGACGGATCCAGGTGCGTTTACGACGCGTGTAGAAGGGAACA
CATTTATTCTCAAAATCAATGCCGCAGCTCCAGCAGTGGCAAAAAATGTATCACCACGATATGTAGAGCAAGGTATCACC
AATATCGGCTTCCAGCGCGGCAGCAAAGGTGAAGGTCAGATTGTGATAGATCTTGCAGGCGCAAATACACCAGTTGATGT
TCAGCAGCAAGGAACCAAAGTTGTTATTCGCTCTCTTGGATCAAAAATTCCTGCGCATTTAATTCGTCGGTTAAATGTCA
ATGATTTTGCAACACCTGCTTCAACAGTGGATGCAGTCAATCAAAATGGGTCAGGTTTAATTACCATTCAAACTAACGGT
AGTTATGAATATATGGCCTATCAAACAGATAATAAATTAACGATTAGCTTAAAACGACCTGAAGACAAAAATCCTTTGCG
TCCTAAAGCGGTTAGTCATTATTCAGGTAAGAAAATTTCTTTAGATTTCCAAGATATTGAAGTTCGCCGTGTGTTACAGC
TTTTAGCTGACTTTACCGATATCAATATGGTGGCAGCTGATTCGGTACAAGGAAATATTACTTTAAGACTGAAAGAGGTA
CCTTGGGATCAGGCACTTGATATTGTCTTAAAAACTAAAAAACTGGATAAACGCCGTAATGGCAATGTGATTTGGATTGC
ACCTATTGAAGAGTTAACTAAAGCAGAGGAGGAGGAAGCTAAGGCGATTGCTCAATCTATTAAACTTTCTCCATTGCAAA
CTGAATATATTCAACTTAGTTATGCAAAAGCAGCAGATATTGAAAAACTGTTAACTTCTTCTAAAAAAGCAAGTAACTCA
TCGTCCTCTACAGGTGGGAGTAGTGGTGATGATCCATTGGGTGAAGCGAATCTCTTAAGTCCTCGTGGTACTGTTTCAGT
TGATACTAGAACTAATACTTTGATTATTAATGATACATCACAGCGTATTGATCAAATTCGTAAGATGATCGATTTACTCG
ATGTGGCCGTTAAGCAAGTCATGGTTGAAGCACGTATTGTAACAGCTGAACGTTCTTTCTCGCGTGATTTAGGGATTAAG
TGGGGATTACAACGTAATAACCCGACAGGATTAAATGCTCCAGGCTCTACCGTGTGGGGAGGAGATTTTTCACCGAAAGT
TGATTTAGGTGTGGATTTAAGTACTGCTTCTGCAGGAACTTTTAACTTTGGCTTACTTAAAATTTCCGACTATATGTTAG
ATTTGCAATTAACAGCATTACAATCTGATGGAATGGGTGAGGTTTTATCAGCGCCAAAAATCTTAACGGGTGACAAGCAA
AAAGCTTATATTCTTCGTGGTACTGAAATACCTTATCAAACTTATAGTGCCAATGAAGGCTCAACGACTTCATTTAAAGA
AGCAAATTTGAAGTTAGAAGTCACACCGAGTATTACTCCTGAAGGAAAGGTTCAACTCGAACTTAAGGTGGAAAAAGATT
CTATTGGTGAAATGACAACAGAAGGACCATCTATTAATACAAATGAACTAGAGACAAATGTATTGATTAATGACGGGGAA
ACGGTTGTTCTTGGTGGTATTTTTGATGATTTTAAAACTACAACTTCAGACAAAGTGCCATTCTTTGGAGATTTACCTGT
AGTTGGGAACCTGTTCAAAAATAATTCCAAAGTTTCTAACCAAGCAGAGTTACTGATTTTTGTTACACCACGAATTGTTA
ATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-136)

Bacterial type II and III secretion system protein (Secretin)

(539-693)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-459)

Secretin and TonB N terminus short domain (STN)

(306-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172YR61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

61.931

100

0.641
  pilQ Acinetobacter baumannii strain A118

61.931

100

0.641
  comQ Acinetobacter baylyi ADP1

61.485

100

0.626
  pilQ Pseudomonas aeruginosa PAK

39.918

100

0.415

Multiple sequence alignment