Detailed information NTG0181056

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: A4215_RS09330
• Genome accession: NZ_CP015573
• Coordinates: 1988559..1989059 (+)
• Length: 166 a.a.
• NCBI ID: WP_005719438.1
• Uniprot ID: A0A9X3URY5
• Organism: Pasteurella multocida strain USDA-ARS-USMARC-60714
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1989242..1989706	1988559..1989059	flank	183

Gene organization within MGE regions

Location: 1988559..1989706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4215_RS09330 (A4215_09230)	ssb	1988559..1989059 (+)	501	WP_005719438.1	single-stranded DNA-binding protein	Machinery gene
A4215_RS09335 (A4215_09235)	tnpA	1989242..1989706 (+)	465	WP_014325726.1	IS200/IS605 family transposase	-

Sequence

Protein

• Length: 166 a.a.
• Molecular weight: 18673.68 Da
• Isoelectric Point: 5.3353

>NTDB_id=181056 A4215_RS09330 WP_005719438.1 1988559..1989059(+) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60714]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide

• Length: 501 bp

>NTDB_id=181056 A4215_RS09330 WP_005719438.1 1988559..1989059(+) (ssb) [Pasteurella multocida strain USDA-ARS-USMARC-60714]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGG
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Glaesserella parasuis strain SC1401	69.231	100	0.759
ssb	Vibrio cholerae strain A1552	53.591	100	0.584
ssb	Neisseria meningitidis MC58	44.068	100	0.47
ssb	Neisseria gonorrhoeae MS11	44.068	100	0.47