NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	BZP34_RS02165	Genome accession	NZ_CP019563
Coordinates	374489..375175 (+)	Length	228 a.a.
NCBI ID	WP_000692886.1	Uniprot ID	-
Organism	Staphylococcus aureus strain SR434
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 369489..380175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BZP34_RS02145 (BZP34_02145)	-	369595..372225 (+)	2631	WP_000425353.1	valine--tRNA ligase	-
BZP34_RS02150 (BZP34_02150)	-	372238..373509 (+)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
BZP34_RS02160 (BZP34_02160)	-	373785..374492 (+)	708	WP_001814477.1	prepilin peptidase	-
BZP34_RS02165 (BZP34_02165)	ysxA/radC	374489..375175 (+)	687	WP_000692886.1	RadC family protein	Machinery gene
BZP34_RS02170 (BZP34_02170)	-	375243..375527 (+)	285	WP_000171853.1	hypothetical protein	-
BZP34_RS02175 (BZP34_02175)	-	375644..375841 (-)	198	WP_000025835.1	hypothetical protein	-
BZP34_RS02180 (BZP34_02180)	-	376001..376474 (+)	474	WP_001236734.1	DUF4930 family protein	-
BZP34_RS02185 (BZP34_02185)	-	376548..376667 (+)	120	WP_000840602.1	hypothetical protein	-
BZP34_RS02190 (BZP34_02190)	mreC	376866..377708 (+)	843	WP_000911040.1	rod shape-determining protein MreC	-
BZP34_RS02195 (BZP34_02195)	mreD	377708..378238 (+)	531	WP_001259924.1	rod shape-determining protein MreD	-
BZP34_RS02200 (BZP34_02200)	rplU	378531..378839 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
BZP34_RS02205 (BZP34_02205)	-	378845..379165 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
BZP34_RS02210 (BZP34_02210)	rpmA	379177..379461 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.24 Da Isoelectric Point: 6.7572

                                >NTDB_id=181014 BZP34_RS02165 WP_000692886.1 374489..375175(+) (ysxA/radC) [Staphylococcus aureus strain SR434]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=181014 BZP34_RS02165 WP_000692886.1 374489..375175(+) (ysxA/radC) [Staphylococcus aureus strain SR434]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACTGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0181014