Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BWR56_RS05005 Genome accession   NZ_CP019562
Coordinates   1032777..1033457 (-) Length   226 a.a.
NCBI ID   WP_000286942.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1027777..1038457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS04970 (BWR56_0986) - 1028011..1028580 (+) 570 WP_049505850.1 CYTH domain-containing protein -
  BWR56_RS04975 (BWR56_0987) - 1028693..1029652 (+) 960 WP_049505851.1 ribose-phosphate diphosphokinase -
  BWR56_RS04980 (BWR56_0988) - 1029662..1030777 (+) 1116 WP_049505852.1 cysteine desulfurase family protein -
  BWR56_RS04985 (BWR56_0989) - 1030782..1031129 (+) 348 WP_000863526.1 DUF1831 domain-containing protein -
  BWR56_RS04990 (BWR56_0990) - 1031136..1031351 (+) 216 WP_000286091.1 DUF4649 family protein -
  BWR56_RS04995 (BWR56_0991) - 1031434..1032075 (+) 642 WP_000653409.1 redox-sensing transcriptional repressor Rex -
  BWR56_RS05000 (BWR56_0992) - 1032091..1032780 (+) 690 WP_076984564.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  BWR56_RS05005 (BWR56_0993) radC 1032777..1033457 (-) 681 WP_000286942.1 RadC family protein Machinery gene
  BWR56_RS05010 (BWR56_0994) pcrA 1033500..1035791 (-) 2292 WP_076984565.1 DNA helicase PcrA -
  BWR56_RS05015 (BWR56_0995) - 1035975..1037645 (-) 1671 WP_076984566.1 formate--tetrahydrofolate ligase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25596.56 Da        Isoelectric Point: 7.1204

>NTDB_id=180952 BWR56_RS05005 WP_000286942.1 1032777..1033457(-) (radC) [Streptococcus oralis strain S.MIT/ORALIS-351]
MYSISFQEDSLLPRERLVKEGVEALSNQELLAILLRTGTRQANVFEIAQKVLNSLTSLTDLKKMTLQELQSLSGIGRIKA
IELQAVIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSATRSIAEPREILH
YALKHMATSVILVHNHPSGAVSPSRNDDHVTKLVKEACELMGIVFLDHLIVSHSDYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=180952 BWR56_RS05005 WP_000286942.1 1032777..1033457(-) (radC) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGTACAGTATTTCATTCCAAGAAGATTCACTCTTGCCTAGAGAAAGACTAGTTAAAGAAGGAGTAGAGGCGCTGAGCAA
TCAAGAATTACTAGCTATTCTGCTCAGAACGGGAACGCGTCAGGCCAATGTTTTTGAAATCGCTCAGAAAGTCTTGAATA
GTTTGACCAGTCTAACTGATCTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGACGGATTAAGGCC
ATTGAATTACAAGCGGTGATTGAACTGGGACATCGCATTCACAAACATGAAACCCTTGAGATGGAAAGTATTCTCAGTAG
TCAAAAGCTAGCCAAGAAAATGCAACAGGAACTTGGCGACAAAAAACAAGAGCACCTAGTGGCGCTCTATCTCAATACTC
AAAATCAAATCATTCATCAACAGACCATTTTTATCGGATCTGCGACACGCAGCATCGCTGAACCAAGGGAAATCCTTCAC
TATGCTTTGAAGCATATGGCAACCTCTGTGATTCTCGTTCACAATCATCCATCTGGTGCTGTATCTCCTAGTCGAAATGA
CGACCATGTCACTAAGCTAGTCAAGGAAGCCTGCGAACTGATGGGAATTGTGTTTCTGGATCATTTAATTGTCTCTCACT
CGGATTACTTTAGTTACCGTGAAAAAACGGATTTGATTTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

94.248

100

0.942
  radC Streptococcus pneumoniae R6

93.805

100

0.938
  radC Streptococcus pneumoniae D39

93.805

100

0.938
  radC Streptococcus gordonii str. Challis substr. CH1

75.664

100

0.757
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.619

92.92

0.442