Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   BWR56_RS00850 Genome accession   NZ_CP019562
Coordinates   171344..171937 (+) Length   197 a.a.
NCBI ID   WP_000273410.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 166344..176937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS00825 (BWR56_0159) - 166690..167130 (-) 441 WP_076984272.1 LytTR family DNA-binding domain-containing protein -
  BWR56_RS00835 (BWR56_0160) hexB 167339..169288 (+) 1950 WP_065371519.1 DNA mismatch repair endonuclease MutL Machinery gene
  BWR56_RS00840 (BWR56_0161) - 169429..169926 (-) 498 WP_065371520.1 helix-turn-helix domain-containing protein -
  BWR56_RS00845 (BWR56_0162) - 170099..171331 (+) 1233 WP_007520831.1 MDR family MFS transporter -
  BWR56_RS00850 (BWR56_0163) ruvA 171344..171937 (+) 594 WP_000273410.1 Holliday junction branch migration protein RuvA Machinery gene
  BWR56_RS00855 (BWR56_0164) - 171947..172510 (+) 564 WP_007520829.1 DNA-3-methyladenine glycosylase I -
  BWR56_RS00860 (BWR56_0165) - 172593..172856 (-) 264 WP_000166112.1 SemiSWEET family transporter -
  BWR56_RS00865 (BWR56_0166) - 172962..173996 (-) 1035 WP_000255130.1 S66 family peptidase -
  BWR56_RS00870 (BWR56_0167) - 174164..174511 (-) 348 WP_007520826.1 TfoX/Sxy family protein -
  BWR56_RS00875 (BWR56_0168) - 174527..175204 (-) 678 WP_076984274.1 DUF1129 domain-containing protein -
  BWR56_RS00880 (BWR56_0169) - 175216..176160 (-) 945 WP_000815617.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21724.19 Da        Isoelectric Point: 6.2573

>NTDB_id=180906 BWR56_RS00850 WP_000273410.1 171344..171937(+) (ruvA) [Streptococcus oralis strain S.MIT/ORALIS-351]
MYEYLKGIITKITAKYIVLEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPAKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=180906 BWR56_RS00850 WP_000273410.1 171344..171937(+) (ruvA) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGTACGAATATCTTAAAGGAATCATTACCAAAATCACTGCTAAATATATCGTCCTTGAGGCAAATGGTATAGGTTATAT
TTTGCATGTAGCCAATCCCTATGCTTACTCAGGTCAGGTCAATCAAGAAACTCAAATTTATGTGCACCAAGTTGTCCGTG
AGGACGCCCATCTGCTCTATGGTTTTCGATCAGAAGATGAGAAGAAACTCTTTCTTAGTCTGATTTCGGTATCAGGGATT
GGTCCGGTATCAGCTCTTGCTATCATCGCAGCTGATGACAATGCTGGCTTGGTTCAGGCGATTGAAACTAAGAACATCAC
CTACTTGACTAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTAGACTTGGAAGGTAAGGTAGTTGTGG
CTAGCGATGACCTTCCTGCCAAGGTGGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCCATGGAAGCCATG
TTGGCACTGGGTTACAAGGCGACTGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAATCGGCCCTTAAGATGTTGGTAAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

97.462

100

0.975
  ruvA Streptococcus pneumoniae R6

96.954

100

0.97
  ruvA Streptococcus pneumoniae D39

96.954

100

0.97
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.777

100

0.426

Multiple sequence alignment