Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   A2I65_RS06825 Genome accession   NZ_CP015532
Coordinates   1390407..1390745 (+) Length   112 a.a.
NCBI ID   WP_156768896.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain TMW 2.212     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1385407..1395745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2I65_RS06795 (A2I65_06655) yqeK 1385605..1386189 (+) 585 WP_015900462.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  A2I65_RS06800 (A2I65_06660) rsfS 1386190..1386540 (+) 351 WP_046099248.1 ribosome silencing factor -
  A2I65_RS06805 (A2I65_06665) - 1386543..1387259 (+) 717 WP_046099249.1 class I SAM-dependent methyltransferase -
  A2I65_RS06810 (A2I65_06670) - 1387308..1387976 (+) 669 WP_015900459.1 ComEA family DNA-binding protein -
  A2I65_RS06815 (A2I65_06675) - 1388051..1388512 (+) 462 WP_046099251.1 ComE operon protein 2 -
  A2I65_RS06820 (A2I65_06680) - 1388706..1390355 (+) 1650 WP_253719942.1 ComEC/Rec2 family competence protein -
  A2I65_RS06825 comEC 1390407..1390745 (+) 339 WP_156768896.1 hypothetical protein Machinery gene
  A2I65_RS06830 (A2I65_06685) holA 1390819..1391793 (+) 975 WP_253719944.1 DNA polymerase III subunit delta -
  A2I65_RS06835 (A2I65_06690) rpsT 1391826..1392077 (-) 252 WP_046099252.1 30S ribosomal protein S20 -
  A2I65_RS06840 (A2I65_06695) lepA 1392342..1394165 (+) 1824 WP_015900453.1 translation elongation factor 4 -
  A2I65_RS06845 (A2I65_06700) hemW 1394234..1395355 (+) 1122 WP_065865436.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12639.42 Da        Isoelectric Point: 10.1713

>NTDB_id=180440 A2I65_RS06825 WP_156768896.1 1390407..1390745(+) (comEC) [Staphylococcus carnosus strain TMW 2.212]
MAIIKTRKYNILTTGDATVKNESKLLANYLIPRIDILKVGHHGSKTSSNEKFINSIHPHYSVISSGKNNAYKLPNKEVIG
RLNKVNSQIYNTQKNGQITFNLDDEIQVLTEQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=180440 A2I65_RS06825 WP_156768896.1 1390407..1390745(+) (comEC) [Staphylococcus carnosus strain TMW 2.212]
ATGGCAATCATTAAAACACGTAAATATAATATACTAACCACTGGTGATGCAACTGTTAAAAATGAATCAAAATTATTAGC
TAATTACTTAATTCCTAGAATTGATATTTTGAAAGTAGGCCATCATGGCAGTAAAACAAGTTCTAATGAAAAGTTTATAA
ATAGTATCCATCCTCATTATAGCGTTATTTCGAGTGGTAAAAACAACGCATATAAACTTCCAAATAAAGAAGTAATAGGC
CGTCTAAATAAAGTAAATTCTCAAATATATAATACTCAAAAAAATGGACAGATAACATTTAATCTAGATGATGAAATACA
AGTATTAACAGAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus N315

60.204

87.5

0.527
  comEC Staphylococcus aureus MW2

60.204

87.5

0.527
  comEC Lactococcus lactis subsp. cremoris KW2

47.727

78.571

0.375
  rec2 Haemophilus influenzae Rd KW20

41.176

91.071

0.375

Multiple sequence alignment