Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   A1D33_RS16810 Genome accession   NZ_CP015443
Coordinates   3533453..3533788 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain CC09     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3528453..3538788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS16760 (A1D33_016755) comGC 3528686..3528952 (+) 267 WP_050515801.1 competence type IV pilus major pilin ComGC Machinery gene
  A1D33_RS16765 (A1D33_016760) comGD 3528942..3529379 (+) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  A1D33_RS16770 (A1D33_016765) comGE 3529363..3529677 (+) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  A1D33_RS16775 (A1D33_016770) comGF 3529586..3530086 (+) 501 WP_257738552.1 competence type IV pilus minor pilin ComGF -
  A1D33_RS16780 (A1D33_016775) comGG 3530087..3530464 (+) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  A1D33_RS16785 (A1D33_016780) - 3530521..3530700 (+) 180 WP_003153093.1 YqzE family protein -
  A1D33_RS16790 (A1D33_016785) - 3530740..3531069 (-) 330 WP_039254490.1 DUF3889 domain-containing protein -
  A1D33_RS16795 (A1D33_016790) tapA 3531328..3531999 (+) 672 WP_031378945.1 amyloid fiber anchoring/assembly protein TapA -
  A1D33_RS16800 (A1D33_016795) sipW 3531971..3532555 (+) 585 WP_015240205.1 signal peptidase I SipW -
  A1D33_RS16805 (A1D33_016800) tasA 3532620..3533405 (+) 786 WP_007408329.1 biofilm matrix protein TasA -
  A1D33_RS16810 (A1D33_016805) sinR 3533453..3533788 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  A1D33_RS16815 (A1D33_016810) sinI 3533822..3533995 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  A1D33_RS16820 (A1D33_016815) - 3534172..3534966 (-) 795 WP_007408330.1 YqhG family protein -
  A1D33_RS16825 (A1D33_016820) - 3534988..3536658 (-) 1671 WP_031378948.1 DEAD/DEAH box helicase -
  A1D33_RS16830 (A1D33_016825) gcvT 3537082..3538182 (+) 1101 WP_031378949.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=179883 A1D33_RS16810 WP_003153104.1 3533453..3533788(-) (sinR) [Bacillus velezensis strain CC09]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=179883 A1D33_RS16810 WP_003153104.1 3533453..3533788(-) (sinR) [Bacillus velezensis strain CC09]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment