Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6044_RS04370 Genome accession   NZ_CP015432
Coordinates   860211..860741 (-) Length   176 a.a.
NCBI ID   WP_010945156.1    Uniprot ID   P59930
Organism   [Haemophilus] ducreyi strain GHA5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 855211..865741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6044_RS04360 (A6044_04370) - 857848..859518 (-) 1671 WP_064088520.1 formate--tetrahydrofolate ligase -
  A6044_RS04365 (A6044_04375) - 859637..860080 (+) 444 WP_010945155.1 YcgN family cysteine cluster protein -
  A6044_RS04370 (A6044_04380) ssb 860211..860741 (-) 531 WP_010945156.1 single-stranded DNA-binding protein Machinery gene
  A6044_RS04375 (A6044_04385) uvrA 860888..863715 (+) 2828 Protein_854 excinuclease ABC subunit UvrA -
  A6044_RS04380 (A6044_04390) - 863736..865655 (+) 1920 WP_010945158.1 ATP-dependent DNA helicase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19697.52 Da        Isoelectric Point: 5.7815

>NTDB_id=179603 A6044_RS04370 WP_010945156.1 860211..860741(-) (ssb) [[Haemophilus] ducreyi strain GHA5]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQAGDVATHQNQAGWNAPASTQNNYNQGASNYNPNQTQAYSAPQTNRTK
PAAESVMDNFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=179603 A6044_RS04370 WP_010945156.1 860211..860741(-) (ssb) [[Haemophilus] ducreyi strain GHA5]
ATGGCAGGAATTAATAAAGTGATTATCGTCGGCAATTTAGGCAACGATCCTGAAATGCGAACCATGCCAAATGGCGAAGC
CGTTGCTAACATTAGCGTAGCAACGAGTGAAAGCTGGACAGACAAAAACACAGGCGAACGCCGTGAAGTAACTGAATGGC
ATCGTATTGTATTTTATCGCCGTCAAGCAGAAGTCGCTGGGCAATATTTACGTAAAGGCTCTCAAGTTTATGTAGAAGGA
CGCTTAAAAACGCGCAAATGGCAAGATCAAAATGGGCAAGATCGCTATACCACTGAAATTCAAGGTGATGTATTACAAAT
GCTAGGTGGACGTAATCAAGCCGGTGATGTTGCTACTCATCAAAATCAAGCGGGTTGGAATGCACCAGCTTCCACACAAA
ATAATTATAATCAAGGCGCTAGCAATTATAATCCTAACCAAACACAAGCGTATTCAGCACCTCAGACAAATCGTACTAAA
CCGGCGGCTGAGTCTGTAATGGATAACTTTGATGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P59930

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

71.585

100

0.744
  ssb Vibrio cholerae strain A1552

56.831

100

0.591
  ssb Neisseria meningitidis MC58

48.315

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.483

Multiple sequence alignment