Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A6042_RS08085 Genome accession   NZ_CP015430
Coordinates   1155565..1155915 (-) Length   116 a.a.
NCBI ID   WP_231087428.1    Uniprot ID   -
Organism   [Haemophilus] ducreyi strain GHA2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1150565..1160915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6042_RS05325 (A6042_05325) rpsT 1151506..1151769 (-) 264 WP_010945727.1 30S ribosomal protein S20 -
  A6042_RS05330 (A6042_05330) murJ 1152130..1153698 (+) 1569 WP_064082470.1 murein biosynthesis integral membrane protein MurJ -
  A6042_RS05335 (A6042_05335) fumC 1153812..1155206 (-) 1395 WP_064082471.1 class II fumarate hydratase -
  A6042_RS08080 sxy/tfoX 1155360..1155614 (-) 255 WP_261786256.1 TfoX/Sxy family protein Regulator
  A6042_RS08085 sxy/tfoX 1155565..1155915 (-) 351 WP_231087428.1 TfoX/Sxy family protein Regulator
  A6042_RS05345 (A6042_05345) rpsJ 1156433..1156744 (+) 312 WP_064082472.1 30S ribosomal protein S10 -
  A6042_RS05350 (A6042_05350) rplC 1156770..1157396 (+) 627 WP_010945721.1 50S ribosomal protein L3 -
  A6042_RS05355 (A6042_05355) rplD 1157412..1158014 (+) 603 WP_010945720.1 50S ribosomal protein L4 -
  A6042_RS05360 (A6042_05360) rplW 1158011..1158316 (+) 306 WP_010945719.1 50S ribosomal protein L23 -
  A6042_RS05365 (A6042_05365) rplB 1158337..1159158 (+) 822 WP_064083369.1 50S ribosomal protein L2 -
  A6042_RS05370 (A6042_05370) rpsS 1159188..1159463 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  A6042_RS05375 (A6042_05375) rplV 1159474..1159806 (+) 333 WP_064082474.1 50S ribosomal protein L22 -
  A6042_RS05380 (A6042_05380) rpsC 1159824..1160528 (+) 705 WP_064082475.1 30S ribosomal protein S3 -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13980.28 Da        Isoelectric Point: 10.0993

>NTDB_id=179568 A6042_RS08085 WP_231087428.1 1155565..1155915(-) (sxy/tfoX) [[Haemophilus] ducreyi strain GHA2]
MGLFKDDTMFGLYKEKCLYLRKSDQYLQEIKDTIPIHFLSDHKISRQSKIFYLVPQHIIENISSYSHWITSSISEYQRLL
SKIRTENQTKIRILLNMNINIERLLARVNINTVYRR

Nucleotide


Download         Length: 351 bp        

>NTDB_id=179568 A6042_RS08085 WP_231087428.1 1155565..1155915(-) (sxy/tfoX) [[Haemophilus] ducreyi strain GHA2]
ATGGGCTTATTTAAAGATGATACTATGTTCGGGCTATATAAGGAAAAATGTTTATATTTACGTAAGTCAGATCAATATTT
GCAGGAAATAAAAGATACTATCCCCATTCATTTTTTATCTGATCATAAAATTAGCCGCCAATCAAAAATATTTTATCTAG
TTCCTCAACACATTATTGAAAACATTTCTTCCTATTCCCACTGGATTACGTCCTCAATCTCTGAATACCAACGTTTACTC
TCAAAAATCCGCACTGAAAATCAAACTAAAATCCGAATTTTACTGAATATGAATATTAATATTGAAAGGTTACTTGCTCG
AGTTAATATTAATACCGTCTACCGTCGATGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

61.062

97.414

0.595
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

57.759

100

0.578
  sxy/tfoX Glaesserella parasuis strain SC1401

37.5

96.552

0.362

Multiple sequence alignment