Detailed information NTG0179564

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: A6042_RS07670
• Genome accession: NZ_CP015430
• Coordinates: 1587263..1587709 (+)
• Length: 148 a.a.
• NCBI ID: WP_064081943.1
• Uniprot ID: -
• Organism: [Haemophilus] ducreyi strain GHA2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1582263..1592709

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6042_RS07640 (A6042_07640)	fdhD	1582379..1583206 (+)	828	WP_064081946.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
A6042_RS07645 (A6042_07645)	nth	1583266..1583901 (-)	636	WP_010945029.1	endonuclease III	-
A6042_RS07650 (A6042_07650)	-	1583910..1584680 (-)	771	WP_064082999.1	TSUP family transporter	-
A6042_RS07655 (A6042_07655)	-	1584801..1585286 (+)	486	WP_064081945.1	dihydrofolate reductase	-
A6042_RS07660 (A6042_07660)	-	1585408..1585623 (+)	216	WP_010945033.1	YgjV family protein	-
A6042_RS07665 (A6042_07665)	radA	1585690..1587069 (-)	1380	WP_064081944.1	DNA repair protein RadA	-
A6042_RS07670 (A6042_07670)	pilA	1587263..1587709 (+)	447	WP_064081943.1	pilin	Machinery gene
A6042_RS07675 (A6042_07675)	pilB	1587721..1589115 (+)	1395	WP_064081942.1	GspE/PulE family protein	Machinery gene
A6042_RS07680 (A6042_07680)	pilC	1589099..1590292 (+)	1194	WP_064081941.1	type II secretion system F family protein	Machinery gene
A6042_RS07895 (A6042_07685)	-	1590292..1590561 (+)	270	WP_078179334.1	hypothetical protein	-
A6042_RS07900 (A6042_07690)	-	1590578..1590937 (+)	360	WP_327216412.1	prepilin peptidase	-
A6042_RS07690 (A6042_07695)	coaE	1590955..1591572 (+)	618	WP_064081940.1	dephospho-CoA kinase	-
A6042_RS07695 (A6042_07700)	yacG	1591575..1591763 (+)	189	WP_064081939.1	DNA gyrase inhibitor YacG	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 15856.17 Da
• Isoelectric Point: 7.5799

>NTDB_id=179564 A6042_RS07670 WP_064081943.1 1587263..1587709(+) (pilA) [[Haemophilus] ducreyi strain GHA2]
MSSLFLIKPLQKAFTLIELMIVIAIIAILATVAIPSYNSYTKKAALSELLAASSAYKTDVEICVYNLGRTDGCNAGTNGI
KNDNSGKSKYVGSISVENGTITVTGKESLKDYSYKMTPTLQGESLTWKTTCNGADTSLFPANFCSTEQ

Nucleotide

• Length: 447 bp

>NTDB_id=179564 A6042_RS07670 WP_064081943.1 1587263..1587709(+) (pilA) [[Haemophilus] ducreyi strain GHA2]
ATGTCATCTTTATTTTTGATTAAGCCACTACAAAAGGCGTTTACTTTAATTGAATTAATGATTGTGATTGCCATTATCGC
AATTTTAGCTACGGTTGCGATTCCTTCTTACAATAGTTATACCAAAAAAGCTGCGTTATCTGAGTTATTAGCCGCTTCAT
CAGCGTATAAAACCGATGTAGAAATATGTGTTTATAATTTGGGTAGAACAGATGGATGTAATGCAGGAACAAACGGTATA
AAAAATGATAATTCAGGTAAAAGTAAATATGTCGGATCAATCAGTGTAGAAAATGGAACGATTACAGTAACGGGTAAAGA
AAGCCTTAAAGATTATAGTTATAAAATGACACCAACCTTACAAGGCGAATCCTTAACTTGGAAAACGACTTGTAATGGTG
CTGATACTAGCCTTTTCCCTGCTAATTTTTGTTCTACTGAACAATAA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (43-142)

• Prokaryotic N-terminal methylation motif (N_methyl) (11-33)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Glaesserella parasuis strain SC1401	61.486	100	0.615
pilA	Haemophilus influenzae 86-028NP	57.246	93.243	0.534
pilA	Haemophilus influenzae Rd KW20	54.167	97.297	0.527