Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | A6042_RS04980 | Genome accession | NZ_CP015430 |
| Coordinates | 1077666..1078808 (-) | Length | 380 a.a. |
| NCBI ID | WP_064082414.1 | Uniprot ID | - |
| Organism | [Haemophilus] ducreyi strain GHA2 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 1072666..1083808
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6042_RS04955 (A6042_04955) | rplA | 1072962..1073651 (-) | 690 | WP_010945641.1 | 50S ribosomal protein L1 | - |
| A6042_RS04960 (A6042_04960) | rplK | 1073656..1074084 (-) | 429 | WP_005599211.1 | 50S ribosomal protein L11 | - |
| A6042_RS04965 (A6042_04965) | nusG | 1074272..1074835 (-) | 564 | WP_064082412.1 | transcription termination/antitermination protein NusG | - |
| A6042_RS04970 (A6042_04970) | secE | 1074837..1075253 (-) | 417 | WP_064083380.1 | preprotein translocase subunit SecE | - |
| A6042_RS04975 (A6042_04975) | - | 1075547..1077556 (+) | 2010 | Protein_966 | OPT family oligopeptide transporter | - |
| A6042_RS04980 (A6042_04980) | dprA | 1077666..1078808 (-) | 1143 | WP_064082414.1 | DNA-processing protein DprA | Machinery gene |
| A6042_RS04985 (A6042_04985) | def | 1078997..1079512 (+) | 516 | WP_064082415.1 | peptide deformylase | - |
| A6042_RS04990 (A6042_04990) | rfaD | 1079642..1080583 (+) | 942 | WP_064082416.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| A6042_RS04995 (A6042_04995) | - | 1080680..1081012 (-) | 333 | WP_064082417.1 | DMT family transporter | - |
| A6042_RS05000 (A6042_05000) | - | 1081468..1081758 (-) | 291 | WP_064082418.1 | YfcZ/YiiS family protein | - |
| A6042_RS05005 (A6042_05005) | - | 1081890..1082375 (-) | 486 | WP_064082419.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 42088.55 Da Isoelectric Point: 5.6909
>NTDB_id=179557 A6042_RS04980 WP_064082414.1 1077666..1078808(-) (dprA) [[Haemophilus] ducreyi strain GHA2]
MKQLALLKLLQIPQLGPQRIARLLNQIDFAEFCQYSKTELQQMGWNDKQIQCWFQPEMRWIDRAITWAEQPNQRLVTLFD
KDYPFLLQQISTAPLLLFVRGSVASLTLLQIAIVGSRDYSPYGEYWASYFTRELIEQGFAVTSGLAIGIDGFCHQQAVKQ
QAVTIAVLGSGLDQVYPARHKKLAEQIIANGGALVSEFFPDQPPLAEHFPRRNRIISGLSLGTLVVEATINSGSLITARY
ALEQGREVFALPNTAQNPYAAGCHQLIKEGAILTESIADILQAIQHQYRPSAKLVNANSVNNSPNIANQQLTIPLTDKTL
PDLTACQQQIMQNISFTPIAIDDLAKATDIAVEILLVELLGLELLGMIKQVCGGYVVTQA
MKQLALLKLLQIPQLGPQRIARLLNQIDFAEFCQYSKTELQQMGWNDKQIQCWFQPEMRWIDRAITWAEQPNQRLVTLFD
KDYPFLLQQISTAPLLLFVRGSVASLTLLQIAIVGSRDYSPYGEYWASYFTRELIEQGFAVTSGLAIGIDGFCHQQAVKQ
QAVTIAVLGSGLDQVYPARHKKLAEQIIANGGALVSEFFPDQPPLAEHFPRRNRIISGLSLGTLVVEATINSGSLITARY
ALEQGREVFALPNTAQNPYAAGCHQLIKEGAILTESIADILQAIQHQYRPSAKLVNANSVNNSPNIANQQLTIPLTDKTL
PDLTACQQQIMQNISFTPIAIDDLAKATDIAVEILLVELLGLELLGMIKQVCGGYVVTQA
Nucleotide
Download Length: 1143 bp
>NTDB_id=179557 A6042_RS04980 WP_064082414.1 1077666..1078808(-) (dprA) [[Haemophilus] ducreyi strain GHA2]
ATGAAACAATTGGCATTACTTAAATTATTGCAGATTCCACAACTAGGCCCACAGCGGATTGCACGTTTATTAAATCAAAT
TGATTTTGCTGAATTTTGTCAATATAGCAAAACAGAACTACAGCAAATGGGATGGAATGACAAACAAATTCAATGTTGGT
TTCAGCCTGAAATGCGTTGGATTGATCGGGCAATAACTTGGGCAGAACAGCCAAATCAACGGCTTGTGACACTGTTTGAT
AAAGATTATCCCTTTTTATTACAGCAAATTAGCACTGCACCACTATTATTATTTGTGCGTGGTTCGGTGGCTAGCTTAAC
TCTGCTACAAATTGCGATTGTTGGCAGTCGTGATTATTCTCCTTATGGAGAGTATTGGGCCTCTTATTTTACACGCGAAT
TAATTGAGCAAGGTTTTGCGGTAACAAGTGGCTTGGCGATTGGCATTGATGGTTTTTGTCATCAACAAGCAGTAAAACAG
CAAGCGGTGACTATTGCTGTATTAGGTAGCGGTTTAGATCAAGTTTATCCCGCACGTCATAAAAAATTAGCAGAACAAAT
TATTGCGAATGGTGGAGCATTAGTGTCAGAGTTTTTTCCCGATCAACCCCCGCTAGCGGAACATTTTCCTCGTCGAAATC
GTATTATTAGTGGCTTGTCACTTGGTACTTTAGTGGTAGAAGCAACGATTAATAGTGGCTCATTAATTACCGCACGCTAT
GCTTTAGAGCAAGGGCGAGAGGTCTTTGCTTTGCCGAATACTGCACAAAATCCTTATGCAGCAGGTTGCCATCAATTGAT
TAAGGAAGGCGCTATTTTAACCGAATCGATAGCGGATATTTTACAAGCGATTCAGCATCAATATCGACCATCAGCTAAGC
TAGTTAATGCAAATAGCGTGAATAATTCCCCTAATATTGCTAATCAGCAATTGACAATACCGTTAACGGATAAAACATTG
CCGGATTTGACCGCTTGTCAGCAACAGATTATGCAAAATATCAGTTTTACGCCGATTGCAATAGATGATTTAGCTAAAGC
AACGGATATAGCGGTCGAAATATTATTAGTTGAGCTACTTGGTTTAGAATTATTAGGTATGATTAAACAGGTTTGTGGGG
GATATGTAGTGACACAGGCATAA
ATGAAACAATTGGCATTACTTAAATTATTGCAGATTCCACAACTAGGCCCACAGCGGATTGCACGTTTATTAAATCAAAT
TGATTTTGCTGAATTTTGTCAATATAGCAAAACAGAACTACAGCAAATGGGATGGAATGACAAACAAATTCAATGTTGGT
TTCAGCCTGAAATGCGTTGGATTGATCGGGCAATAACTTGGGCAGAACAGCCAAATCAACGGCTTGTGACACTGTTTGAT
AAAGATTATCCCTTTTTATTACAGCAAATTAGCACTGCACCACTATTATTATTTGTGCGTGGTTCGGTGGCTAGCTTAAC
TCTGCTACAAATTGCGATTGTTGGCAGTCGTGATTATTCTCCTTATGGAGAGTATTGGGCCTCTTATTTTACACGCGAAT
TAATTGAGCAAGGTTTTGCGGTAACAAGTGGCTTGGCGATTGGCATTGATGGTTTTTGTCATCAACAAGCAGTAAAACAG
CAAGCGGTGACTATTGCTGTATTAGGTAGCGGTTTAGATCAAGTTTATCCCGCACGTCATAAAAAATTAGCAGAACAAAT
TATTGCGAATGGTGGAGCATTAGTGTCAGAGTTTTTTCCCGATCAACCCCCGCTAGCGGAACATTTTCCTCGTCGAAATC
GTATTATTAGTGGCTTGTCACTTGGTACTTTAGTGGTAGAAGCAACGATTAATAGTGGCTCATTAATTACCGCACGCTAT
GCTTTAGAGCAAGGGCGAGAGGTCTTTGCTTTGCCGAATACTGCACAAAATCCTTATGCAGCAGGTTGCCATCAATTGAT
TAAGGAAGGCGCTATTTTAACCGAATCGATAGCGGATATTTTACAAGCGATTCAGCATCAATATCGACCATCAGCTAAGC
TAGTTAATGCAAATAGCGTGAATAATTCCCCTAATATTGCTAATCAGCAATTGACAATACCGTTAACGGATAAAACATTG
CCGGATTTGACCGCTTGTCAGCAACAGATTATGCAAAATATCAGTTTTACGCCGATTGCAATAGATGATTTAGCTAAAGC
AACGGATATAGCGGTCGAAATATTATTAGTTGAGCTACTTGGTTTAGAATTATTAGGTATGATTAAACAGGTTTGTGGGG
GATATGTAGTGACACAGGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Glaesserella parasuis strain SC1401 |
68.633 |
98.158 |
0.674 |
| dprA | Haemophilus influenzae Rd KW20 |
49.708 |
90 |
0.447 |
| dprA | Vibrio campbellii strain DS40M4 |
45.308 |
98.158 |
0.445 |
| dprA | Vibrio cholerae strain A1552 |
41.867 |
98.684 |
0.413 |
| dprA | Legionella pneumophila strain ERS1305867 |
38.298 |
98.947 |
0.379 |