Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | A6041_RS03415 | Genome accession | NZ_CP015429 |
| Coordinates | 767925..769118 (-) | Length | 397 a.a. |
| NCBI ID | WP_064081941.1 | Uniprot ID | - |
| Organism | [Haemophilus] ducreyi strain GHA1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 762925..774118
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6041_RS03390 (A6041_03395) | lptE | 764892..765389 (+) | 498 | WP_064081937.1 | LPS assembly lipoprotein LptE | - |
| A6041_RS03395 (A6041_03400) | holA | 765395..766420 (+) | 1026 | WP_064083324.1 | DNA polymerase III subunit delta | - |
| A6041_RS03400 (A6041_03405) | yacG | 766454..766642 (-) | 189 | WP_064081939.1 | DNA gyrase inhibitor YacG | - |
| A6041_RS03405 (A6041_03410) | coaE | 766645..767262 (-) | 618 | WP_064081940.1 | dephospho-CoA kinase | - |
| A6041_RS07810 (A6041_03415) | - | 767280..767663 (-) | 384 | WP_335673639.1 | prepilin peptidase | - |
| A6041_RS07815 (A6041_03420) | - | 767656..767925 (-) | 270 | WP_078179334.1 | hypothetical protein | - |
| A6041_RS03415 (A6041_03425) | pilC | 767925..769118 (-) | 1194 | WP_064081941.1 | type II secretion system F family protein | Machinery gene |
| A6041_RS03420 (A6041_03430) | pilB | 769102..770496 (-) | 1395 | WP_064081942.1 | GspE/PulE family protein | Machinery gene |
| A6041_RS03425 (A6041_03435) | pilA | 770508..770954 (-) | 447 | WP_064081943.1 | pilin | Machinery gene |
| A6041_RS03430 (A6041_03440) | radA | 771148..772527 (+) | 1380 | WP_064081944.1 | DNA repair protein RadA | - |
| A6041_RS03435 (A6041_03445) | - | 772594..772809 (-) | 216 | WP_010945033.1 | YgjV family protein | - |
| A6041_RS03440 (A6041_03450) | - | 772931..773416 (-) | 486 | WP_064081945.1 | dihydrofolate reductase | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 45709.40 Da Isoelectric Point: 10.1709
>NTDB_id=179528 A6041_RS03415 WP_064081941.1 767925..769118(-) (pilC) [[Haemophilus] ducreyi strain GHA1]
MLKIYEFHWRAFNRFNQRQKGKSLAKSHDELEQRLLAKGYSNIHIQRDFILVRKPKSEQITQLINQLAMLLNASVPLKQS
LVMVLENVHNIKLYLWLYEIITLLEAGHTFSASLTKMNVYLTKQEIQLIKMGEQSGRLAIMLDNIAKVRTQSQKLANKVK
KIMFYPAIILAVSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLFSGIVSYFLAKKRLF
WRTLRSRLLNHMPGFQQIIKDARIIFFSQNLALMLNAHIHLDATLKAFLSEHRQDPVLHQEILSILSLLKQGYKFSEGLN
PTVFTSQVVQMMAIGEQSGNLAKMCMCISQLYQQKLDYQIDLFAQLLEPVLMLVIGIIVGTILIGIYLPIFDMGALV
MLKIYEFHWRAFNRFNQRQKGKSLAKSHDELEQRLLAKGYSNIHIQRDFILVRKPKSEQITQLINQLAMLLNASVPLKQS
LVMVLENVHNIKLYLWLYEIITLLEAGHTFSASLTKMNVYLTKQEIQLIKMGEQSGRLAIMLDNIAKVRTQSQKLANKVK
KIMFYPAIILAVSISVLIGLLLFIVPQFEDLYRNKDQSLPFITQLLFQLSNFLQQYAFILFIGGLFSGIVSYFLAKKRLF
WRTLRSRLLNHMPGFQQIIKDARIIFFSQNLALMLNAHIHLDATLKAFLSEHRQDPVLHQEILSILSLLKQGYKFSEGLN
PTVFTSQVVQMMAIGEQSGNLAKMCMCISQLYQQKLDYQIDLFAQLLEPVLMLVIGIIVGTILIGIYLPIFDMGALV
Nucleotide
Download Length: 1194 bp
>NTDB_id=179528 A6041_RS03415 WP_064081941.1 767925..769118(-) (pilC) [[Haemophilus] ducreyi strain GHA1]
ATGCTGAAAATATATGAATTTCATTGGCGGGCTTTTAATCGTTTTAATCAACGGCAAAAAGGTAAATCTCTGGCCAAAAG
TCACGATGAATTAGAACAACGGCTATTAGCTAAAGGCTATTCAAATATCCATATTCAACGTGATTTTATTTTAGTTAGGA
AACCCAAAAGCGAACAAATCACTCAATTAATTAATCAGTTAGCTATGTTATTGAATGCCTCGGTTCCATTAAAACAATCG
CTGGTGATGGTATTAGAAAACGTACATAATATTAAATTATATTTATGGTTATATGAAATTATTACGCTGTTAGAAGCGGG
GCATACTTTTTCAGCCAGTCTCACTAAAATGAACGTTTATTTGACTAAGCAAGAAATTCAGTTAATTAAGATGGGAGAAC
AGAGTGGGCGTTTAGCCATTATGCTAGATAACATTGCAAAAGTACGTACTCAATCACAGAAATTAGCTAATAAAGTAAAG
AAAATTATGTTTTATCCGGCGATTATTTTAGCCGTATCAATTAGTGTATTAATTGGATTGTTATTATTTATTGTGCCTCA
ATTTGAAGATCTTTATCGTAACAAAGATCAGTCACTGCCTTTTATTACCCAATTATTATTTCAGTTATCGAATTTTCTTC
AACAATATGCATTTATTTTATTCATCGGCGGCCTATTTAGCGGTATTGTTAGCTATTTTTTAGCGAAAAAGAGGCTTTTT
TGGCGTACCTTAAGATCGCGTTTATTAAATCATATGCCAGGGTTTCAGCAAATTATTAAAGATGCTCGAATTATTTTCTT
TAGTCAAAATCTTGCGTTAATGCTTAATGCACATATTCATTTAGATGCAACGTTAAAAGCATTTTTATCAGAACATCGCC
AAGATCCGGTATTACATCAGGAGATTTTGAGTATATTAAGTTTATTAAAGCAAGGTTATAAATTCTCTGAGGGGCTTAAT
CCAACCGTATTTACTAGCCAAGTAGTACAAATGATGGCAATTGGCGAACAAAGTGGTAATTTGGCTAAAATGTGTATGTG
TATTAGTCAACTGTATCAGCAAAAACTAGACTACCAAATTGATTTGTTTGCTCAATTACTTGAACCGGTTTTAATGTTAG
TGATTGGCATTATTGTGGGGACGATTTTGATTGGGATTTATTTGCCTATTTTTGATATGGGAGCATTGGTGTAA
ATGCTGAAAATATATGAATTTCATTGGCGGGCTTTTAATCGTTTTAATCAACGGCAAAAAGGTAAATCTCTGGCCAAAAG
TCACGATGAATTAGAACAACGGCTATTAGCTAAAGGCTATTCAAATATCCATATTCAACGTGATTTTATTTTAGTTAGGA
AACCCAAAAGCGAACAAATCACTCAATTAATTAATCAGTTAGCTATGTTATTGAATGCCTCGGTTCCATTAAAACAATCG
CTGGTGATGGTATTAGAAAACGTACATAATATTAAATTATATTTATGGTTATATGAAATTATTACGCTGTTAGAAGCGGG
GCATACTTTTTCAGCCAGTCTCACTAAAATGAACGTTTATTTGACTAAGCAAGAAATTCAGTTAATTAAGATGGGAGAAC
AGAGTGGGCGTTTAGCCATTATGCTAGATAACATTGCAAAAGTACGTACTCAATCACAGAAATTAGCTAATAAAGTAAAG
AAAATTATGTTTTATCCGGCGATTATTTTAGCCGTATCAATTAGTGTATTAATTGGATTGTTATTATTTATTGTGCCTCA
ATTTGAAGATCTTTATCGTAACAAAGATCAGTCACTGCCTTTTATTACCCAATTATTATTTCAGTTATCGAATTTTCTTC
AACAATATGCATTTATTTTATTCATCGGCGGCCTATTTAGCGGTATTGTTAGCTATTTTTTAGCGAAAAAGAGGCTTTTT
TGGCGTACCTTAAGATCGCGTTTATTAAATCATATGCCAGGGTTTCAGCAAATTATTAAAGATGCTCGAATTATTTTCTT
TAGTCAAAATCTTGCGTTAATGCTTAATGCACATATTCATTTAGATGCAACGTTAAAAGCATTTTTATCAGAACATCGCC
AAGATCCGGTATTACATCAGGAGATTTTGAGTATATTAAGTTTATTAAAGCAAGGTTATAAATTCTCTGAGGGGCTTAAT
CCAACCGTATTTACTAGCCAAGTAGTACAAATGATGGCAATTGGCGAACAAAGTGGTAATTTGGCTAAAATGTGTATGTG
TATTAGTCAACTGTATCAGCAAAAACTAGACTACCAAATTGATTTGTTTGCTCAATTACTTGAACCGGTTTTAATGTTAG
TGATTGGCATTATTGTGGGGACGATTTTGATTGGGATTTATTTGCCTATTTTTGATATGGGAGCATTGGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
51.134 |
100 |
0.511 |
| pilC | Haemophilus influenzae Rd KW20 |
39.75 |
100 |
0.401 |
| pilC | Haemophilus influenzae 86-028NP |
39.25 |
100 |
0.395 |