Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BWI88_RS14950 Genome accession   NZ_CP019271
Coordinates   2937321..2937836 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 13P460A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2932321..2942836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI88_RS14905 (BWI88_14900) csrA 2932773..2932958 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BWI88_RS14935 (BWI88_14930) yqaB 2934551..2935117 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BWI88_RS14940 (BWI88_14935) yqaA 2935114..2935542 (+) 429 WP_001287457.1 YqaA family protein -
  BWI88_RS14945 (BWI88_14940) gshA 2935615..2937171 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  BWI88_RS14950 (BWI88_14945) luxS 2937321..2937836 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BWI88_RS14955 (BWI88_14950) emrB 2937900..2939438 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BWI88_RS14960 (BWI88_14955) emrA 2939455..2940627 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BWI88_RS14965 (BWI88_14960) emrR 2940754..2941284 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BWI88_RS14970 (BWI88_14965) ygaH 2941375..2941710 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BWI88_RS14975 (BWI88_14970) ygaZ 2941700..2942437 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=179530 BWI88_RS14950 WP_001130211.1 2937321..2937836(+) (luxS) [Escherichia coli strain 13P460A]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=179530 BWI88_RS14950 WP_001130211.1 2937321..2937836(+) (luxS) [Escherichia coli strain 13P460A]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment