Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | A6038_RS07855 | Genome accession | NZ_CP015426 |
| Coordinates | 1616866..1618008 (-) | Length | 380 a.a. |
| NCBI ID | WP_064085205.1 | Uniprot ID | A0AAC8UDE8 |
| Organism | [Haemophilus] ducreyi strain VAN3 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 1611866..1623008
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6038_RS07830 (A6038_07855) | rplA | 1612166..1612855 (-) | 690 | WP_010945641.1 | 50S ribosomal protein L1 | - |
| A6038_RS07835 (A6038_07860) | rplK | 1612860..1613288 (-) | 429 | WP_005599211.1 | 50S ribosomal protein L11 | - |
| A6038_RS07840 (A6038_07865) | nusG | 1613476..1614039 (-) | 564 | WP_010945642.1 | transcription termination/antitermination protein NusG | - |
| A6038_RS07845 (A6038_07870) | secE | 1614041..1614457 (-) | 417 | WP_010945643.1 | preprotein translocase subunit SecE | - |
| A6038_RS07850 (A6038_07875) | - | 1614747..1616756 (+) | 2010 | WP_064085204.1 | OPT family oligopeptide transporter | - |
| A6038_RS07855 (A6038_07880) | dprA | 1616866..1618008 (-) | 1143 | WP_064085205.1 | DNA-processing protein DprA | Machinery gene |
| A6038_RS07860 (A6038_07885) | def | 1618198..1618713 (+) | 516 | WP_010945646.1 | peptide deformylase | - |
| A6038_RS07865 (A6038_07890) | rfaD | 1618845..1619786 (+) | 942 | WP_010945647.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| A6038_RS07870 (A6038_07895) | - | 1619882..1620214 (-) | 333 | WP_010945648.1 | DMT family transporter | - |
| A6038_RS07875 (A6038_07900) | - | 1620670..1620960 (-) | 291 | WP_041603730.1 | YfcZ/YiiS family protein | - |
| A6038_RS08500 | - | 1621092..1621388 (-) | 297 | WP_010945650.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 42135.76 Da Isoelectric Point: 6.3418
>NTDB_id=179478 A6038_RS07855 WP_064085205.1 1616866..1618008(-) (dprA) [[Haemophilus] ducreyi strain VAN3]
MKQLALLKLLQIPQLGPQRIARLLNQIDFAEFCQYSKKELQQMGWNDKQIQCWFQPEMRWIDRAIAWAEQPNQRLVTLFD
KDYPFLLQQISTAPPLLFVRGSVASLTLPQIAIVGSRDYSPYGEYWASYFTRELIEQGFAVTSGLAIGIDGFCHKQAVKQ
QAVTIAVLGSGLDQVYPARHKKLAEQIIANGGALVSEFFPDQPPLAEHFPRRNRIISGLSLGTLVVEATINSGSLITARY
ALEQGREVFALPNTAQNPYAVGCHQLIKEGAILTESIADILQAIQHQYRPSAKLVNANSMNNPPNIANQQLTIPLTDKIL
PDLTACQQQIMQNISFTPIAIDDLAKATDIAVEILLVELLGLELLGMIKQVCGGYVVTQA
MKQLALLKLLQIPQLGPQRIARLLNQIDFAEFCQYSKKELQQMGWNDKQIQCWFQPEMRWIDRAIAWAEQPNQRLVTLFD
KDYPFLLQQISTAPPLLFVRGSVASLTLPQIAIVGSRDYSPYGEYWASYFTRELIEQGFAVTSGLAIGIDGFCHKQAVKQ
QAVTIAVLGSGLDQVYPARHKKLAEQIIANGGALVSEFFPDQPPLAEHFPRRNRIISGLSLGTLVVEATINSGSLITARY
ALEQGREVFALPNTAQNPYAVGCHQLIKEGAILTESIADILQAIQHQYRPSAKLVNANSMNNPPNIANQQLTIPLTDKIL
PDLTACQQQIMQNISFTPIAIDDLAKATDIAVEILLVELLGLELLGMIKQVCGGYVVTQA
Nucleotide
Download Length: 1143 bp
>NTDB_id=179478 A6038_RS07855 WP_064085205.1 1616866..1618008(-) (dprA) [[Haemophilus] ducreyi strain VAN3]
ATGAAACAATTGGCATTACTTAAATTATTGCAGATTCCACAACTAGGCCCACAGCGGATTGCGCGTTTATTAAATCAAAT
TGATTTTGCTGAATTTTGTCAATATAGCAAAAAAGAACTACAGCAAATGGGATGGAATGACAAACAAATTCAATGTTGGT
TTCAGCCTGAAATGCGTTGGATTGATCGGGCAATAGCTTGGGCAGAACAGCCAAATCAACGGCTTGTGACACTGTTTGAT
AAAGATTATCCCTTTTTATTACAGCAAATTAGCACTGCACCACCATTATTATTTGTGCGTGGTTCGGTGGCTAGCTTAAC
TCTGCCACAAATTGCGATTGTTGGCAGTCGTGATTATTCTCCTTATGGAGAGTATTGGGCCTCTTATTTTACACGAGAAT
TAATTGAACAAGGTTTTGCGGTAACAAGTGGCTTGGCGATTGGCATTGATGGTTTTTGTCATAAACAAGCAGTAAAACAG
CAAGCGGTGACTATTGCTGTATTAGGTAGCGGTTTAGATCAAGTTTATCCCGCACGTCATAAAAAATTAGCAGAACAAAT
TATTGCGAATGGTGGAGCATTAGTGTCAGAGTTTTTTCCCGATCAACCCCCGCTAGCGGAACATTTTCCTCGTCGAAATC
GTATTATTAGTGGCTTGTCACTTGGTACTTTAGTGGTAGAAGCAACGATTAATAGTGGCTCATTAATTACCGCACGCTAT
GCTTTAGAGCAAGGGCGAGAGGTCTTTGCTTTGCCGAATACTGCACAAAATCCTTATGCAGTGGGTTGCCATCAATTGAT
TAAAGAAGGCGCTATTTTAACCGAGTCGATAGCGGATATTTTACAAGCGATTCAGCATCAATATCGACCATCAGCTAAGT
TAGTTAATGCAAATAGCATGAATAATCCCCCTAATATTGCTAATCAGCAATTGACAATACCGTTAACGGATAAAATATTG
CCGGATTTGACCGCTTGTCAGCAACAGATTATGCAAAATATCAGTTTTACGCCAATTGCAATAGATGATTTAGCCAAAGC
AACGGATATAGCGGTCGAAATATTATTAGTTGAGCTACTTGGTTTAGAATTATTAGGTATGATTAAACAGGTTTGTGGGG
GATATGTAGTGACACAGGCATAA
ATGAAACAATTGGCATTACTTAAATTATTGCAGATTCCACAACTAGGCCCACAGCGGATTGCGCGTTTATTAAATCAAAT
TGATTTTGCTGAATTTTGTCAATATAGCAAAAAAGAACTACAGCAAATGGGATGGAATGACAAACAAATTCAATGTTGGT
TTCAGCCTGAAATGCGTTGGATTGATCGGGCAATAGCTTGGGCAGAACAGCCAAATCAACGGCTTGTGACACTGTTTGAT
AAAGATTATCCCTTTTTATTACAGCAAATTAGCACTGCACCACCATTATTATTTGTGCGTGGTTCGGTGGCTAGCTTAAC
TCTGCCACAAATTGCGATTGTTGGCAGTCGTGATTATTCTCCTTATGGAGAGTATTGGGCCTCTTATTTTACACGAGAAT
TAATTGAACAAGGTTTTGCGGTAACAAGTGGCTTGGCGATTGGCATTGATGGTTTTTGTCATAAACAAGCAGTAAAACAG
CAAGCGGTGACTATTGCTGTATTAGGTAGCGGTTTAGATCAAGTTTATCCCGCACGTCATAAAAAATTAGCAGAACAAAT
TATTGCGAATGGTGGAGCATTAGTGTCAGAGTTTTTTCCCGATCAACCCCCGCTAGCGGAACATTTTCCTCGTCGAAATC
GTATTATTAGTGGCTTGTCACTTGGTACTTTAGTGGTAGAAGCAACGATTAATAGTGGCTCATTAATTACCGCACGCTAT
GCTTTAGAGCAAGGGCGAGAGGTCTTTGCTTTGCCGAATACTGCACAAAATCCTTATGCAGTGGGTTGCCATCAATTGAT
TAAAGAAGGCGCTATTTTAACCGAGTCGATAGCGGATATTTTACAAGCGATTCAGCATCAATATCGACCATCAGCTAAGT
TAGTTAATGCAAATAGCATGAATAATCCCCCTAATATTGCTAATCAGCAATTGACAATACCGTTAACGGATAAAATATTG
CCGGATTTGACCGCTTGTCAGCAACAGATTATGCAAAATATCAGTTTTACGCCAATTGCAATAGATGATTTAGCCAAAGC
AACGGATATAGCGGTCGAAATATTATTAGTTGAGCTACTTGGTTTAGAATTATTAGGTATGATTAAACAGGTTTGTGGGG
GATATGTAGTGACACAGGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Glaesserella parasuis strain SC1401 |
68.365 |
98.158 |
0.671 |
| dprA | Haemophilus influenzae Rd KW20 |
49.563 |
90.263 |
0.447 |
| dprA | Vibrio campbellii strain DS40M4 |
45.213 |
98.947 |
0.447 |
| dprA | Vibrio cholerae strain A1552 |
42.4 |
98.684 |
0.418 |
| dprA | Legionella pneumophila strain ERS1305867 |
38.564 |
98.947 |
0.382 |