Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | A6037_RS03960 | Genome accession | NZ_CP015425 |
| Coordinates | 821690..822832 (-) | Length | 380 a.a. |
| NCBI ID | WP_064082414.1 | Uniprot ID | - |
| Organism | [Haemophilus] ducreyi strain VAN2 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Genomic Context
Location: 816690..827832
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6037_RS03935 (A6037_03955) | rplA | 816985..817674 (-) | 690 | WP_010945641.1 | 50S ribosomal protein L1 | - |
| A6037_RS03940 (A6037_03960) | rplK | 817679..818107 (-) | 429 | WP_005599211.1 | 50S ribosomal protein L11 | - |
| A6037_RS03945 (A6037_03965) | nusG | 818295..818858 (-) | 564 | WP_064082412.1 | transcription termination/antitermination protein NusG | - |
| A6037_RS03950 (A6037_03970) | secE | 818860..819276 (-) | 417 | WP_064082413.1 | preprotein translocase subunit SecE | - |
| A6037_RS03955 (A6037_03975) | - | 819570..821580 (+) | 2011 | Protein_762 | OPT family oligopeptide transporter | - |
| A6037_RS03960 (A6037_03980) | dprA | 821690..822832 (-) | 1143 | WP_064082414.1 | DNA-processing protein DprA | Machinery gene |
| A6037_RS03965 (A6037_03985) | def | 823021..823536 (+) | 516 | WP_064082415.1 | peptide deformylase | - |
| A6037_RS03970 (A6037_03990) | rfaD | 823666..824607 (+) | 942 | WP_064082416.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| A6037_RS03975 (A6037_03995) | - | 824704..825036 (-) | 333 | WP_064082417.1 | DMT family transporter | - |
| A6037_RS03980 (A6037_04000) | - | 825492..825782 (-) | 291 | WP_064082418.1 | YfcZ/YiiS family protein | - |
| A6037_RS03985 (A6037_04005) | - | 825914..826399 (-) | 486 | WP_064082419.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 42088.55 Da Isoelectric Point: 5.6909
>NTDB_id=179443 A6037_RS03960 WP_064082414.1 821690..822832(-) (dprA) [[Haemophilus] ducreyi strain VAN2]
MKQLALLKLLQIPQLGPQRIARLLNQIDFAEFCQYSKTELQQMGWNDKQIQCWFQPEMRWIDRAITWAEQPNQRLVTLFD
KDYPFLLQQISTAPLLLFVRGSVASLTLLQIAIVGSRDYSPYGEYWASYFTRELIEQGFAVTSGLAIGIDGFCHQQAVKQ
QAVTIAVLGSGLDQVYPARHKKLAEQIIANGGALVSEFFPDQPPLAEHFPRRNRIISGLSLGTLVVEATINSGSLITARY
ALEQGREVFALPNTAQNPYAAGCHQLIKEGAILTESIADILQAIQHQYRPSAKLVNANSVNNSPNIANQQLTIPLTDKTL
PDLTACQQQIMQNISFTPIAIDDLAKATDIAVEILLVELLGLELLGMIKQVCGGYVVTQA
MKQLALLKLLQIPQLGPQRIARLLNQIDFAEFCQYSKTELQQMGWNDKQIQCWFQPEMRWIDRAITWAEQPNQRLVTLFD
KDYPFLLQQISTAPLLLFVRGSVASLTLLQIAIVGSRDYSPYGEYWASYFTRELIEQGFAVTSGLAIGIDGFCHQQAVKQ
QAVTIAVLGSGLDQVYPARHKKLAEQIIANGGALVSEFFPDQPPLAEHFPRRNRIISGLSLGTLVVEATINSGSLITARY
ALEQGREVFALPNTAQNPYAAGCHQLIKEGAILTESIADILQAIQHQYRPSAKLVNANSVNNSPNIANQQLTIPLTDKTL
PDLTACQQQIMQNISFTPIAIDDLAKATDIAVEILLVELLGLELLGMIKQVCGGYVVTQA
Nucleotide
Download Length: 1143 bp
>NTDB_id=179443 A6037_RS03960 WP_064082414.1 821690..822832(-) (dprA) [[Haemophilus] ducreyi strain VAN2]
ATGAAACAATTGGCATTACTTAAATTATTGCAGATTCCACAACTAGGCCCACAGCGGATTGCACGTTTATTAAATCAAAT
TGATTTTGCTGAATTTTGTCAATATAGCAAAACAGAACTACAGCAAATGGGATGGAATGACAAACAAATTCAATGTTGGT
TTCAGCCTGAAATGCGTTGGATTGATCGGGCAATAACTTGGGCAGAACAGCCAAATCAACGGCTTGTGACACTGTTTGAT
AAAGATTATCCCTTTTTATTACAGCAAATTAGCACTGCACCACTATTATTATTTGTGCGTGGTTCGGTGGCTAGCTTAAC
TCTGCTACAAATTGCGATTGTTGGCAGTCGTGATTATTCTCCTTATGGAGAGTATTGGGCCTCTTATTTTACACGCGAAT
TAATTGAGCAAGGTTTTGCGGTAACAAGTGGCTTGGCGATTGGCATTGATGGTTTTTGTCATCAACAAGCAGTAAAACAG
CAAGCGGTGACTATTGCTGTATTAGGTAGCGGTTTAGATCAAGTTTATCCCGCACGTCATAAAAAATTAGCAGAACAAAT
TATTGCGAATGGTGGAGCATTAGTGTCAGAGTTTTTTCCCGATCAACCCCCGCTAGCGGAACATTTTCCTCGTCGAAATC
GTATTATTAGTGGCTTGTCACTTGGTACTTTAGTGGTAGAAGCAACGATTAATAGTGGCTCATTAATTACCGCACGCTAT
GCTTTAGAGCAAGGGCGAGAGGTCTTTGCTTTGCCGAATACTGCACAAAATCCTTATGCAGCAGGTTGCCATCAATTGAT
TAAGGAAGGCGCTATTTTAACCGAATCGATAGCGGATATTTTACAAGCGATTCAGCATCAATATCGACCATCAGCTAAGC
TAGTTAATGCAAATAGCGTGAATAATTCCCCTAATATTGCTAATCAGCAATTGACAATACCGTTAACGGATAAAACATTG
CCGGATTTGACCGCTTGTCAGCAACAGATTATGCAAAATATCAGTTTTACGCCGATTGCAATAGATGATTTAGCTAAAGC
AACGGATATAGCGGTCGAAATATTATTAGTTGAGCTACTTGGTTTAGAATTATTAGGTATGATTAAACAGGTTTGTGGGG
GATATGTAGTGACACAGGCATAA
ATGAAACAATTGGCATTACTTAAATTATTGCAGATTCCACAACTAGGCCCACAGCGGATTGCACGTTTATTAAATCAAAT
TGATTTTGCTGAATTTTGTCAATATAGCAAAACAGAACTACAGCAAATGGGATGGAATGACAAACAAATTCAATGTTGGT
TTCAGCCTGAAATGCGTTGGATTGATCGGGCAATAACTTGGGCAGAACAGCCAAATCAACGGCTTGTGACACTGTTTGAT
AAAGATTATCCCTTTTTATTACAGCAAATTAGCACTGCACCACTATTATTATTTGTGCGTGGTTCGGTGGCTAGCTTAAC
TCTGCTACAAATTGCGATTGTTGGCAGTCGTGATTATTCTCCTTATGGAGAGTATTGGGCCTCTTATTTTACACGCGAAT
TAATTGAGCAAGGTTTTGCGGTAACAAGTGGCTTGGCGATTGGCATTGATGGTTTTTGTCATCAACAAGCAGTAAAACAG
CAAGCGGTGACTATTGCTGTATTAGGTAGCGGTTTAGATCAAGTTTATCCCGCACGTCATAAAAAATTAGCAGAACAAAT
TATTGCGAATGGTGGAGCATTAGTGTCAGAGTTTTTTCCCGATCAACCCCCGCTAGCGGAACATTTTCCTCGTCGAAATC
GTATTATTAGTGGCTTGTCACTTGGTACTTTAGTGGTAGAAGCAACGATTAATAGTGGCTCATTAATTACCGCACGCTAT
GCTTTAGAGCAAGGGCGAGAGGTCTTTGCTTTGCCGAATACTGCACAAAATCCTTATGCAGCAGGTTGCCATCAATTGAT
TAAGGAAGGCGCTATTTTAACCGAATCGATAGCGGATATTTTACAAGCGATTCAGCATCAATATCGACCATCAGCTAAGC
TAGTTAATGCAAATAGCGTGAATAATTCCCCTAATATTGCTAATCAGCAATTGACAATACCGTTAACGGATAAAACATTG
CCGGATTTGACCGCTTGTCAGCAACAGATTATGCAAAATATCAGTTTTACGCCGATTGCAATAGATGATTTAGCTAAAGC
AACGGATATAGCGGTCGAAATATTATTAGTTGAGCTACTTGGTTTAGAATTATTAGGTATGATTAAACAGGTTTGTGGGG
GATATGTAGTGACACAGGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Glaesserella parasuis strain SC1401 |
68.633 |
98.158 |
0.674 |
| dprA | Haemophilus influenzae Rd KW20 |
49.708 |
90 |
0.447 |
| dprA | Vibrio campbellii strain DS40M4 |
45.308 |
98.158 |
0.445 |
| dprA | Vibrio cholerae strain A1552 |
41.867 |
98.684 |
0.413 |
| dprA | Legionella pneumophila strain ERS1305867 |
38.298 |
98.947 |
0.379 |